G385933


Basic Information

Item Value
gene id G385933
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 28536339 ~ 28539057 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU438349
GCTGCTCCAACACATTTGTGTATTTACAAATAATGGCCTTCGTATGAAATACAGTACATTTGCAGAACATTCTGGTGAAGAGAGTTGgaccgggagagagggaggagttacAACAGTCTGGGGAGGTGAGGACAATAGGGCTGGGATAACAGACCGTCactggggacagggacagaggacagggacagagaacagGGACAGACAACAGGGTCAGAGGACAGCgacagaggacagggacagaggacaTAGGAGGGCACAGTGGTGTCAGGTTCAGGCTACATGGCTACAGTAACAGGTGCCAGGTGAAGAGCTCCTCCTAAAAGACTCAATTCACCCTGTAACACAACTGCATCTCATACTGTACATCAACTTTTGAATGGAAAATTACACAAGTTAACTGATTCATGACATTGTGATATGGACAGAAAACCAACACTTAACAAGCTTTACAAAATCTCCTGAATTCAGATAACAACATGGTGCTGCTGACTACTGAAGCTTCCTCTGAAACCATTGTAGTGAAGATTAAGAGGGACCACAGACAAACTAAGCATGTACAGGGACTCAAAACATTAGGCGCCTAAACCACATTTCAGATGCAAATACTActaagctctggtcaaaagaggAGGGCGATGGGAGTGCAGTATGGTTCTTGGATGAGCATGGATGGATATAGTGCACTTCCAATAGTAGAGCCCTTAACTTGGGCACTtcaacctccacacacacactataacattGATATGTGAAAACCTTACACAAAAGATATTAAACAAATGTAATCAACAGTTTTTGTTATCCAACATTGACTTTATTCCCTCACTAACAGCATTAACAATGTGTCTTTGTTAACTGCGGTTGTCCTTCAAAGAGGTGTGAGATCCACTGCTCTAACACTACAGCTGGATACACAGTATCCATGAGACAAGCTGATCCTTGTTTCCCAACATTGACTGGCTGAAGTGAATGATGTCAGTCACAATGAATTTCTGAATCCCACACTTGCAGCCAACAGAGGCAGAGGCTAATGTATTTCTCAGTGATAGTCCATCCCCTTTACAAAGGATGTGAGTTGGTCTCAGTACACTAAATAGACTGTGTATCAGACAGTGGAGGGAAATATTTACCGTGTTCCTGTGTTTGAGAAGCCCATCACTATTGATCTCAGctggccttctctctctcctcattactCATTCCAGTCCTCTGGTGGTAAAAATTACCTCTGGGCTGAACaggacacctctctctccctgctagtGAGCCTATCCAGAGGCTGAATAGGAcacctctcttcctcactctctctcatctctcgttctccctcctgGTGGTCGATTTTTCTCATTCCAGAAATAACTAGCGCATGGCCCCCCAGCATGTGGTCTGCTTGGACACCGCTCCTCACGACATCAAAGACACGGCTAAATCACACTAGAGCTGCAGCTGCTACAGATGAAACTAACGTTGCCACAACCTACCTTCAACTTTTGGAGAAAGGTTGGAGGTGTTGGGACGTGTGGGTTGATCATCACTGAATGGTCGCTAACCTATCAATATCAATGAAGGTTTTTGTTGTTTGCTTGGGGAAAAACTCAAGAATATTACTAAGAACATAATTGAAACTAATCGTACTAGTTATAGAGTCATCCCTGAACCTTTTgtttatgtacagtacataattgTAGTTTTGTAGAGGTTATGACAATGTTGAAAAGAAGTAGTGGATGGTAATATGGGCTGACTTGTTAGGACACATACAGTTTGTGTTTACTGTTACAGGGAAGAAACACAGTTATAACACACATTCTTACACCCTGATACAACATCCAACTATGTCCTCTTCCCTGAACTCTGTTAGATAAAAACAATCCAATTCCATTTTGAGTCCAAGCCCAGATATTACATGTGTATGAAATATAACTACACCTTTCCAAAATGAAAAGAGAGACTGGTGCTTTTAAGTGGTGGGATGTTTTGGGCTTGTCTCTGCACTAGTTACAGTGACTGAACCAGAACAATCAGAAAAGGGAAAGAGCACAAGGACTCAACAATAAATAGGAAAATACATTTGCCTGACAAAATACCATATCAACTCCCAGGCTCCTCGCAAATATACACCCGTGTTGCTTGCTAAATTTGAATTACGTgattcatttaaaaaatacatgaaTTGATCACTAATTCCCCTAAAAGGACACAAATTTCTAAACATGAGTGCTTCTTTTTTTCCGGTTCAGCTAAGATCGTTCACTCCCAGTCTCTGAATCATCAAATCCAACCCCCATCTCATGAACTTCTAATGGACTCTTCAAAGGCAAGAAAAGAGAGCCCCCTCCCCTTGGCAACAGGACTTCTCCAAGCAACAACCATGGCTCTGGATCCTTGATTCACCATTGATTGACCAGCATGCCTTGTCCTCATTTGATTGGCCAGTATGTCTTGGCCTCATTTGATTGGCCAGTACTCCTTTACTTCATTGCCATTGGCTGATCTGATCAGTCACAAGCCATCTTCAAATTATCATAGTTATTCACTGTAAGACTTCATCATATTCTAAATCAAAGTCATTTGGGGGCCTGAAAAAAAGTTATTTTTAGTAGTTCTTGTTCTGTTGTTTCATCTTGCAAAAGGTATGGTGGGACCACAGAGGAgagagtgattgtgtgtgtgtgtgtgtgtgtgt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU438349 True 2689 lncRNA 0.42 2 28536339 28539057

Neighbor

gene id symbol gene type direction distance location
LOC110523549 LOC106567216 coding upstream 52954 28481432 ~ 28483385 (+)
LOC110522905 LOC106563371 coding upstream 60801 28473547 ~ 28475595 (+)
LOC110523547 ccdc152 coding upstream 69205 28464099 ~ 28467134 (+)
ghr1 ghr1 coding upstream 72390 28439078 ~ 28463949 (+)
rgs7bpb LOC106566593 coding upstream 112392 28418222 ~ 28423947 (+)
pip5k1ba LOC106566653 coding downstream 181220 28720277 ~ 28733042 (+)
LOC110523554 LOC106566671 coding downstream 198404 28737461 ~ 28780731 (+)
LOC110523556 LOC106566689 coding downstream 257391 28796448 ~ 28804711 (+)
smc5 smc5 coding downstream 266169 28805226 ~ 28829428 (+)
zfand5b zfand5b coding downstream 290658 28829715 ~ 28837189 (+)
G385891 NA non-coding upstream 64052 28472069 ~ 28472287 (+)
G385885 NA non-coding upstream 103964 28430681 ~ 28432375 (+)
G385886 NA non-coding upstream 111445 28424520 ~ 28424894 (+)
G385884 NA non-coding upstream 111822 28424303 ~ 28424517 (+)
G385946 NA non-coding downstream 21190 28560247 ~ 28560612 (+)
G385973 NA non-coding downstream 119515 28658572 ~ 28658860 (+)
G386018 NA non-coding downstream 128403 28667460 ~ 28667837 (+)
G386017 NA non-coding downstream 130658 28669715 ~ 28670050 (+)
G386022 NA non-coding downstream 143693 28682750 ~ 28683207 (+)
G385805 NA other upstream 118784 28416605 ~ 28417555 (+)
G385171 LOC106566130 other upstream 631608 27904467 ~ 27904731 (+)
G385053 NA other upstream 829261 27706714 ~ 27707078 (+)
LOC110522888 LOC106566402 other upstream 852946 27675352 ~ 27719165 (+)
G383794 LOC106566282 other upstream 1872726 26661838 ~ 26663613 (+)
spag8 LOC106566715 other downstream 387220 28926263 ~ 28931410 (+)
tbx5a LOC106566939 other downstream 1202743 29741800 ~ 29763439 (+)
G387516 NA other downstream 1357929 29896986 ~ 29898134 (+)
G388019 NA other downstream 1747894 30286951 ~ 30287824 (+)
G390184 NA other downstream 3421298 31960355 ~ 31960745 (+)

Expression


Co-expression Network