G393094


Basic Information

Item Value
gene id G393094
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 34376995 ~ 34378386 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU446136
gtgttgcacaatccaggtgtggaaaactcTTAAGAGAATTACcccaaaagactcacagctgtaatcactgccaaaggtgattctacaaagtattgacttatgGGTGTGGATAATTACAGTACGTGAATTAGATATTTCGGTATTTCATTTTccataaatgtgcaaaaatgtctaaaaacttgttttcacttgggtgagagaaaaatatgtttaatccattttcaattcaggcaCTGTAAAATCCATACCATTAACATGCATGACCATTAATATACATTGAGGTTTTCATTAATAATGGAGAGTTCGATGCATTCTGATGACAGCCACAGGAACCTGCTTGATTGCCTTCCTAATAGCATATTGTAATTCCTGCAGCCATGCAAGAAATTATGAAAAAAGACAAAAAGGGCACAAGGTAGACTCCCTACCGTATCTATGTGTCGTTAGCTATTGTGATGGTAAGATTGTGTAACCACGAATGCTACCAGGTCATTCAACTCACCTACTACATAACATCTGACCTATGGACAACAATCAACATTGAAAAAGGTACTGCACAGTCTTTCATATCTCAAGGGCAAGCTTCTTATCAATAACAACACTTCCCGTCCCCCTCCTATGGCTGTACCCCATCACACTCAAACTGCAGCACAACTTCTGCATACGGTGGCAACAATGGCTGAGGATAATTGGCTGGCACAGGGAAGGTTTCTCTGAAGTTTATTGGCACTTGGCGGCCCCAGCAAGAGTCTCTTAGGTGTAGGAGCATTGGGACGAGCCCAACAAAACCCCTGTCTGTCTCAACTCTGCAGCAATTTGACGCAAGCTAGCAACAGAGGAGCTTTGGGGGAGAAGCCTGGGAATGGGAGAAAATTGGAAATGCAGCAGAGTAATAATGGAGTGATAGGGTGGGGGGTTGGGGTGCAGGAGAGAAATTGTTATTGGTTTGAAAATATCTGGTTGACATGAGGGGAGAGAGGCAGTTGTGTCGTGGTGAAAGAGGAAGGATAACGGCACAGCAGGGGGGATTCTTGAGAAGGAGAGGctggaggaagacagagagatagtatATAGTTATAGATAATAGCCTCTCTGATACTTCCTATGGATGTTAAGGGTCATTAGGAAAGACCCTTAACATCCAGAGAAACATCCTGGGGCACTTCACCCACTTTGACCCATTCTCTGTCCTTCCCCTGTCCAATCAGGAGGTGCCActctgtcctccccctgtccAATCAGGAGGTAACAGACTGGCATGGTGGTGGGTGGCAGATGACAACAAGCTGACCTTTAATGGCAGAGACACTTCACTAGTGGCTGTGAGATGTGCGATGTGAGCAGATCAGGCGATGACAGAGGTGCTGCTTGACAAGCTTTCAGCCGTGAGGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU446136 True 1392 lncRNA 0.45 1 34376995 34378386

Neighbor

gene id symbol gene type direction distance location
si:ch211-127i16.2 LOC106565287 coding upstream 229669 34107180 ~ 34147326 (+)
LOC110523649 LOC106565324 coding upstream 288011 33846773 ~ 34088984 (+)
trnaa-ugc-11 NA coding upstream 344155 34032765 ~ 34032840 (+)
LOC110523646 LOC106565369 coding upstream 532874 33830706 ~ 33844121 (+)
LOC100136128 LOC106565394 coding upstream 577281 33640488 ~ 33799714 (+)
adra1ab LOC106565247 coding downstream 58400 34436786 ~ 34448792 (+)
LOC110523660 LOC106565209 coding downstream 708440 35086826 ~ 35206863 (+)
si:dkey-242g16.2 LOC106565196 coding downstream 975712 35354098 ~ 35357244 (+)
stoml2 stml2 coding downstream 1089554 35467940 ~ 35480670 (+)
LOC118964586 LOC106565090 coding downstream 1103842 35482228 ~ 35542795 (+)
G393092 NA non-coding upstream 1427 34375258 ~ 34375568 (+)
G393090 NA non-coding upstream 5643 34370981 ~ 34371352 (+)
G393089 NA non-coding upstream 6253 34370459 ~ 34370742 (+)
G393088 LOC106585398 non-coding upstream 7344 34369307 ~ 34369651 (+)
G393087 NA non-coding upstream 8457 34368239 ~ 34368538 (+)
G393107 LOC106565253 non-coding downstream 18969 34397355 ~ 34398358 (+)
G393117 LOC106565272 non-coding downstream 35018 34413404 ~ 34421789 (+)
G393185 NA non-coding downstream 136729 34515115 ~ 34517457 (+)
G393208 NA non-coding downstream 172555 34550941 ~ 34612776 (+)
G393248 NA non-coding downstream 233576 34611962 ~ 34679537 (+)
G392776 NA other upstream 228294 34147474 ~ 34150795 (+)
G391805 NA other upstream 1015654 33360957 ~ 33361341 (+)
G391513 LOC100136561 other upstream 1214015 33158826 ~ 33162980 (+)
G390393 NA other upstream 2156462 32220181 ~ 32220533 (+)
G390184 NA other upstream 2416250 31960355 ~ 31960745 (+)
G394882 NA other downstream 1526726 35905112 ~ 35905781 (+)
G394910 NA other downstream 1588551 35966937 ~ 36004829 (+)
you2 you2 other downstream 1654874 36033260 ~ 36034806 (+)
G395005 LOC106564805 other downstream 1824515 36202901 ~ 36206616 (+)
G395034 NA other downstream 1901914 36280300 ~ 36301290 (+)

Expression


Co-expression Network