G393117 (LOC106565272)


Basic Information

Item Value
gene id G393117
gene name LOC106565272
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 34413404 ~ 34421789 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU446165
AAAGCCATGCCATTGGATAGTTCATTTTATTATTATCATAAATCTGTAACGTAAACTGGATAGTCTCTTTTACAACCAATCACACATCTTTAGAGAGCATTACAAACAGATAGTCATGACAAATATATAACAGGCCTTGCATATCTTAAATACTCTATCAGTAATAAATACTGTTAAGTTTAAAGCCAAAGCCACAGTCGCATTGCACACGTGTGATATGCAATAAAACAAAGAGTAAAGTTAAGCCACTTGGTGATGCTGTTTCTCAGTCTGGGAGATACTCGAGGTAAATGAAACAGTCTCATGCAGCTAACAGGGGCAAAAAGGTGGCTCAGTCGTCAAAGTCTGGAATGTCGTCATAGGAGTATCCGCGGTAACCCTTGGAGGCGTAGTAGGCGATTCGTAAATGGTAGAATCCAGGAAGGAACACAAGGATCCCAATGATGAGGACTGGAACTGTACGGTCCGGGTGCGAAACTTCTATGGATCCTGCAAGGAGAAGCGCACCGATTACAATCAGTAAGGAGCCAATCAGGAAGAGGAACGTAGCCAGGGCAATAGCCTTGTAGGGAACTTTGGGAGGGCTTTTCTTGAACTGCAAGTCAATGTAGCCATCCTCATCGCCAGCTAGTCTTGAGTACTTAACTTTGTTACTGGATACCCCACCAGCAGCAACAGTGCTGCGTGCAGGCATCATTACAAGACGGGAGCTGTATTACTGCTGGACGCAAAATAATAAGTGTCATCAACGTAATACTATTTTCCCCAATAAATGCTAATTTCGCGGTAGTGATAGACTTTACAAATAGCTACAGTGTTTTGTTCACTTGTTTTCTATCTACAGAACTTCACCAAGCCCTCTGTC

Function

NR:

description
transmembrane protein 230-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU446165 True 865 lncRNA 0.43 4 34413404 34421789

Neighbor

gene id symbol gene type direction distance location
si:ch211-127i16.2 LOC106565287 coding upstream 266078 34107180 ~ 34147326 (+)
LOC110523649 LOC106565324 coding upstream 324420 33846773 ~ 34088984 (+)
trnaa-ugc-11 NA coding upstream 380564 34032765 ~ 34032840 (+)
LOC110523646 LOC106565369 coding upstream 569283 33830706 ~ 33844121 (+)
LOC100136128 LOC106565394 coding upstream 613690 33640488 ~ 33799714 (+)
adra1ab LOC106565247 coding downstream 14997 34436786 ~ 34448792 (+)
LOC110523660 LOC106565209 coding downstream 665037 35086826 ~ 35206863 (+)
si:dkey-242g16.2 LOC106565196 coding downstream 932309 35354098 ~ 35357244 (+)
stoml2 stml2 coding downstream 1046151 35467940 ~ 35480670 (+)
LOC118964586 LOC106565090 coding downstream 1060439 35482228 ~ 35542795 (+)
G393107 LOC106565253 non-coding upstream 15046 34397355 ~ 34398358 (+)
G393094 NA non-coding upstream 35018 34376995 ~ 34378386 (+)
G393092 NA non-coding upstream 37836 34375258 ~ 34375568 (+)
G393090 NA non-coding upstream 42052 34370981 ~ 34371352 (+)
G393089 NA non-coding upstream 42662 34370459 ~ 34370742 (+)
G393185 NA non-coding downstream 93326 34515115 ~ 34517457 (+)
G393208 NA non-coding downstream 129152 34550941 ~ 34612776 (+)
G393248 NA non-coding downstream 190173 34611962 ~ 34679537 (+)
G393367 NA non-coding downstream 360603 34782392 ~ 34785490 (+)
G393726 NA non-coding downstream 434987 34856776 ~ 34857092 (+)
G392776 NA other upstream 264703 34147474 ~ 34150795 (+)
G391805 NA other upstream 1052063 33360957 ~ 33361341 (+)
G391513 LOC100136561 other upstream 1250424 33158826 ~ 33162980 (+)
G390393 NA other upstream 2192871 32220181 ~ 32220533 (+)
G390184 NA other upstream 2452659 31960355 ~ 31960745 (+)
G394882 NA other downstream 1483323 35905112 ~ 35905781 (+)
G394910 NA other downstream 1545148 35966937 ~ 36004829 (+)
you2 you2 other downstream 1611471 36033260 ~ 36034806 (+)
G395005 LOC106564805 other downstream 1781112 36202901 ~ 36206616 (+)
G395034 NA other downstream 1858511 36280300 ~ 36301290 (+)

Expression


Co-expression Network