G394473



Basic Information


Item Value
gene id G394473
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 35480908 ~ 35481712 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>TU447577
AGCCTTTCTTAACCATTTCTGATGCACCGTGACTGGGGGCTCAACTCCTTATGTCGTCCTCCATCCTCATTTCGCCTGCTTCCGAAAAATGTCAAAGATAATTTCGGTGGCAAAGAGAGGAAACGTGGAAAcaaatgcccttgtttgaaatgagACTAGGCCGCTAGCACTTTATCAGGCAGGAGGAATCCCAAAATATGTGTTAAGTGCCCCAAAAATTAAGCTTCTTTTGCCAGACATTTTATAGATCAAAGGATAAGTAGAATAGTTTTCTCCTCTGAGaaaacagctgattcaaaggggAATAGGCAGATTTTAAAACGCGTTCATGCTAGCCGTAGGGAGGATGCTCTTGTGCATCCTCTGCCGAAGTAGATAATCGAGGAGGTGAGCATACTGTTCGCCTACTAACGAATTGACACTTCGACCACCTACCGGTCTCTGGatcacagaggagaggatggaattTTGTATAATTGAGAATTGTTCAATATCGTCAATTATCCCATGAACCACCCAAACAAAGCTACATGCTGACCAAACCACCTCTGCGCCATCGTGCGTATGTTGATTTTCACTATGTGttcatgacacgcaggttaaaatactAAAACCAACTGTGAACCAGCTATATTGGTCAAATTCTAGGTTATCCTGATGGTTTTTAGGCATAATGACATCACTCAGACTCAACAATGACAAGGTATTGGCCAcctagatatgtacataatgtagtttatttgaaataggaaacactgtcagcaGAAAATATAATCGTCTAGAATATCCATGTGAATGGACAATA

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU447577 True 805 lncRNA 0.41 1 35480908 35481712

Neighbor


gene id symbol gene type direction distance location
stoml2 stml2 coding upstream 238 35467940 ~ 35480670 (+)
si:dkey-242g16.2 LOC106565196 coding upstream 123664 35354098 ~ 35357244 (+)
LOC110523660 LOC106565209 coding upstream 281917 35086826 ~ 35206863 (+)
adra1ab LOC106565247 coding upstream 1032116 34436786 ~ 34448792 (+)
si:ch211-127i16.2 LOC106565287 coding upstream 1333582 34107180 ~ 34147326 (+)
LOC118964586 LOC106565090 coding downstream 516 35482228 ~ 35542795 (+)
unc13bb LOC106565090 coding downstream 64833 35546545 ~ 35595618 (+)
atp8b5b LOC106565083 coding downstream 120889 35602601 ~ 35620548 (+)
LOC110523670 LOC106565078 coding downstream 158016 35639728 ~ 35651003 (+)
si:dkey-106l3.7 LOC106563357 coding downstream 177516 35659228 ~ 35667190 (+)
G394497 NA non-coding upstream 14233 35466103 ~ 35466675 (+)
G394495 NA non-coding upstream 16041 35463819 ~ 35464867 (+)
G394485 NA non-coding upstream 37080 35442566 ~ 35443828 (+)
G394373 NA non-coding upstream 176363 35304311 ~ 35304545 (+)
G394361 NA non-coding upstream 181266 35299373 ~ 35299642 (+)
G394475 NA non-coding downstream 78813 35560525 ~ 35596524 (+)
G394472 NA non-coding downstream 115916 35597628 ~ 35599459 (+)
G394722 NA non-coding downstream 142127 35623839 ~ 35624053 (+)
G394728 NA non-coding downstream 148929 35630641 ~ 35630854 (+)
G394731 NA non-coding downstream 150727 35632439 ~ 35632653 (+)
G392776 NA other upstream 1332207 34147474 ~ 34150795 (+)
G391805 NA other upstream 2119567 33360957 ~ 33361341 (+)
G391513 LOC100136561 other upstream 2317928 33158826 ~ 33162980 (+)
G390393 NA other upstream 3260375 32220181 ~ 32220533 (+)
G390184 NA other upstream 3520163 31960355 ~ 31960745 (+)
G394882 NA other downstream 423400 35905112 ~ 35905781 (+)
G394910 NA other downstream 485225 35966937 ~ 36004829 (+)
you2 you2 other downstream 551548 36033260 ~ 36034806 (+)
G395005 LOC106564805 other downstream 721189 36202901 ~ 36206616 (+)
G395034 NA other downstream 798588 36280300 ~ 36301290 (+)

Expression



Co-expression Network