G394472


Basic Information

Item Value
gene id G394472
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 35597628 ~ 35599459 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU447576
tgtcaggttggatcaggagcattgctgcacagctgttttttaggtctctccagggttcaagtccggcctctgagtgggccactcaaggacattcagaagcTTGTCCTGAAgcccctcctgcgttgtcttggctgtgtgcatagctatttttagtcccacccttcagctctcCTCAATGCCATCCATCTACCgtttaagtcagaagtttacatacaccttagccaaatacatttaaacttagtttttcacaattcttcacatttaatactagtaaaaattccggttttatgtcagttaggatcaccactttattttaataatgtgaaatgtcagaataatagtagagtgatttacttcagctttaatttctttcatcacattcccagtgggtcagaagtttacatacactcaattagtatttagtagcattgcctttaaattgttgaacttgggtcaaacgttcaggtagccttccacaagcgtaccacaataagttgggtgaattttggcccattcctcctgacagagctggtgtaactgagtcaggtttgttggcctccttgctcgcacatgctttgtcagttctgcccacacattttctataggattgcgttcagggctttgtgatggccactccaataccttgactttgttgtccttaagccattttaccacaactttggaagtatgcttggggtcattgtccatttggaagacccatttgcgaccaagctttaacttcctcactgatgtcttgagatgttgcttcaatatatccacattttcccctcatgatgccatcgattttgtgaagtgcaccagtctctcctgcagcaaagcacccccacaacatgatgctgccacccccgtgcttcatggttgggatggtgtttttcggctcctcctttttcctccaaacctaacgatggtcattatggtcaaacagttccatttttgtttcatcagaccagaggacatttctccaaaaaagtgagatttttgtccccatgtgcagttgcaaaccgtagtctgtctttttatagcggttttggagcagtggcttcttccttgctgagcagccttccATGTTATGTTggtataggacttgttttactgtggatatagatagttttgtacttgtttcctacagcatcttcacaaggtcctttgctgcagttcggggattgatttacacttttttgcaccaaagtacgttcatctctaggagacagaacggtctccttcctgagcggtatgatggctgcatggtcccatagtgtttataccttcaggcatttggaaattgctcccaaggatgaactagacgtggcggtctacaattttttttctgaggtctttctgaggctgatttcttttgattttcccatgatgtgaagcgaagaggcattgagtttgaaggtaggccttgaaatacatccacaggtacacctccaattgactcaaattatgtcaattagcctatcagaagtttctgaaaccattacattttctggaattttccaagctgtttagaggcacagtcaacttggtgtatgtaaacagTGAATtatgaaataatctgtaaacaattgttggaaaaatgacttgtgtcatgcacaaagcagatgtcctaaccaacttgccaaaacctatagtttgttaacaagacatttgtggaggtttaatgactccaacctgagtgcaTGTACttacttacgacttcaactgtatctctgaAAACCATCCTGTTATGATTTCTATttcccatatatttttcaactgtgctgtgatgtttcacaaaagttctgaacctttctatctcatagtttcta

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU447576 True 1832 lncRNA 0.41 1 35597628 35599459

Neighbor

gene id symbol gene type direction distance location
unc13bb LOC106565090 coding upstream 2010 35546545 ~ 35595618 (+)
LOC118964586 LOC106565090 coding upstream 54833 35482228 ~ 35542795 (+)
stoml2 stml2 coding upstream 116958 35467940 ~ 35480670 (+)
si:dkey-242g16.2 LOC106565196 coding upstream 240384 35354098 ~ 35357244 (+)
LOC110523660 LOC106565209 coding upstream 398637 35086826 ~ 35206863 (+)
atp8b5b LOC106565083 coding downstream 3142 35602601 ~ 35620548 (+)
LOC110523670 LOC106565078 coding downstream 40269 35639728 ~ 35651003 (+)
si:dkey-106l3.7 LOC106563357 coding downstream 59769 35659228 ~ 35667190 (+)
sppl3 LOC106565002 coding downstream 224754 35824213 ~ 35862626 (+)
kcnn2 LOC106564970 coding downstream 330655 35930114 ~ 35960310 (+)
G394475 NA non-coding upstream 1104 35560525 ~ 35596524 (+)
G394473 NA non-coding upstream 115916 35480908 ~ 35481712 (+)
G394497 NA non-coding upstream 130953 35466103 ~ 35466675 (+)
G394495 NA non-coding upstream 132761 35463819 ~ 35464867 (+)
G394485 NA non-coding upstream 153800 35442566 ~ 35443828 (+)
G394722 NA non-coding downstream 24380 35623839 ~ 35624053 (+)
G394728 NA non-coding downstream 31182 35630641 ~ 35630854 (+)
G394731 NA non-coding downstream 32980 35632439 ~ 35632653 (+)
G394746 NA non-coding downstream 69976 35669435 ~ 35669708 (+)
G394747 NA non-coding downstream 70444 35669903 ~ 35670207 (+)
G392776 NA other upstream 1448927 34147474 ~ 34150795 (+)
G391805 NA other upstream 2236287 33360957 ~ 33361341 (+)
G391513 LOC100136561 other upstream 2434648 33158826 ~ 33162980 (+)
G390393 NA other upstream 3377095 32220181 ~ 32220533 (+)
G390184 NA other upstream 3636883 31960355 ~ 31960745 (+)
G394882 NA other downstream 305653 35905112 ~ 35905781 (+)
G394910 NA other downstream 367478 35966937 ~ 36004829 (+)
you2 you2 other downstream 433801 36033260 ~ 36034806 (+)
G395005 LOC106564805 other downstream 603442 36202901 ~ 36206616 (+)
G395034 NA other downstream 680841 36280300 ~ 36301290 (+)

Expression


Co-expression Network