G394970 (LOC106563191)


Basic Information

Item Value
gene id G394970
gene name LOC106563191
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 36120306 ~ 36121931 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU448143
GCCAGAATAGACTTTTATTCAGACTTCCCATGCGGGACAGCGTTTCAAGTCTTTTGGAAATGGAACGTttgagaaaaggggaggggtgtTTCGGGGTCAAGAGACAGGCTATATCACATGTGATGGGTTGGGGATGGTAGCAGTAGGCAGGGTTTGGGTGGCGAGGGTGGGAAAAGACTAGAAAAGGCACTTTTTCACCTTCAGTAACCAGACTGACAAGAAAGTAGAGAAAATAAGAAAGACCCAGTCCACACAGACCCAGAGAGCATTGTAAACAAGGCCGGTTTCTCTGTACAACACCAGCCAGACTTTTGCTTCCATCTGTGGGCCTATGGGAAcaaaaatattacatttgttttacttCTGGGAGGTCAGTCATCCCACAAACCCTTGTCGCTGAAATATAAATAACACTGGCGAATGCTTAGAGCACCACCTTGTGGCCGCAACCCAAAGTTTTTCTGTAGAACACTTCAGGAACCAGGCTAAAGACAGCCCCTCATCAGGAGTGACAAGCTGAGTTTCTCTGTAACCACAGTCTAAGGAGGGGGGAGTGCCTCACATTACATCTTCAAGTGACAAAGAACGAGATAGAGAACTAGAGACATGGAAGGTACATCCCAACAAGCCAGAGGTCATTAGCAGCTTCTGACTTCTCTGTAACACATCAGAAAACATGGTCTGAAGGGATTACACTTCCAAACAAGGTACCATATTTTACCACAAACTCGAGTTCCTCTTCACCAATTACATTTTTGGTTACGTCTAACAAAATGGCAAAAagttttacatttttataaaaaTAGCTACGGGGGACAAGAGTTGCATCCTAAATACCCAATTACTCCTGGCAATCTTCAACCCTAAATGTGCCATGACTTATTTGACCCAATGGAGAAACATTGGGTGGGGGTTAGGtacagagagaagggggtagtctttagctaacattccactccttagACAGGCTAGGGTGAGAATATATTTCTGTGAAGTCAAATCACTACAGAACAGtcagagggaaagacagggaaATGGAATTCAAGGAGTGTGCAAGCAATTTCAAGTGGgtaaagagaggacagaggtgtaACATTTTCCAATAAGGGAGTAGATAgcgtttttggggggggggggcattcttCCCTCCCAGAGTGTGTTGGTTTTTCTGtagtacacctacagctctgggTGGGAAGGTTGGGGTTCAGTATTTGAGCTTTTTGGGGACCTCCCAAGGGAAGGCCTCCCGCCCAAAGTGGCCATAGGCAGCGGTCCGCTGGTAGATGGGCTTTTTCAGGTCCAGCTCCCTGACAATGACACCAGGGCGGAGGTCAAAGTTCTTCTTGACAATGTCCAGCagctccctctcgctcttctGGGAAGTCCCATAGTGGAAGATGGAGATGGACAGGGGATGGGCCACTCCAATGGCATA

Function

NR:

description
S-adenosylmethionine synthase-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU448143 True 1438 lncRNA 0.47 2 36120306 36121931

Neighbor

gene id symbol gene type direction distance location
LOC110523692 LOC106564846 coding upstream 201 36085124 ~ 36120105 (+)
LOC110523693 ggcx coding upstream 64271 36042518 ~ 36056035 (+)
you2 you2 coding upstream 85500 36033260 ~ 36034806 (+)
slc20a1b LOC106564912 coding upstream 100952 36006206 ~ 36019354 (+)
drg1 drg1 coding upstream 153562 35963201 ~ 35966744 (+)
LOC110523704 LOC100136432 coding downstream 249435 36371366 ~ 36376388 (+)
LOC110523708 LOC106564755 coding downstream 336871 36458802 ~ 36469839 (+)
antxr1b LOC105014916 coding downstream 397474 36519405 ~ 36569643 (+)
LOC110523711 LOC106564742 coding downstream 485471 36607402 ~ 36614580 (+)
LOC110523714 LOC106565816 coding downstream 517725 36639656 ~ 36645198 (+)
G394958 NA non-coding upstream 11421 36099373 ~ 36108885 (+)
G394904 NA non-coding upstream 84961 35943336 ~ 36035345 (+)
G394923 NA non-coding upstream 136575 35977856 ~ 35983731 (+)
G394885 NA non-coding upstream 201453 35908309 ~ 35918853 (+)
G394883 NA non-coding upstream 214088 35906011 ~ 35906218 (+)
G395041 nfkbil1 non-coding downstream 138220 36260151 ~ 36261227 (+)
G395035 NA non-coding downstream 160800 36282731 ~ 36288452 (+)
G395062 NA non-coding downstream 180519 36302450 ~ 36302649 (+)
G395087 NA non-coding downstream 213221 36335152 ~ 36336353 (+)
G395109 NA non-coding downstream 244684 36366615 ~ 36367808 (+)
G394910 NA other upstream 115477 35966937 ~ 36004829 (+)
G394882 NA other upstream 214525 35905112 ~ 35905781 (+)
G392776 NA other upstream 1971605 34147474 ~ 34150795 (+)
G391805 NA other upstream 2758965 33360957 ~ 33361341 (+)
G395005 LOC106564805 other downstream 80970 36202901 ~ 36206616 (+)
G395034 NA other downstream 158369 36280300 ~ 36301290 (+)
G396022 kdm2b other downstream 843153 36965084 ~ 36965652 (+)
m17 m17 other downstream 1287270 37409195 ~ 37411565 (+)
srsf9 sfrs9 other downstream 1796763 37917781 ~ 37921282 (+)

Expression


Co-expression Network