G395035


Basic Information

Item Value
gene id G395035
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 36282731 ~ 36288452 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU448221
TGTGAAGAGGACTCTCCAATAAACGGTAAGCAGACCTCAATTTAAAAGCGAAAACGTAATGAAAATACAAATAGGGCATTGAAAGAACATTATTATAACTCTTATGACGCACACGTTTAATACATGTTAAAGACTGTAGGCGAATTGTGAGATCTGCTCTACATGTTTTACAGCCTTCAGAAGTCCTAAAAAGTATAATTGAATTGATATGGAATTGATTTGAAAAATATTCGTTTTCCTGCCTGTCTAGGCAAGCCGGGGCAAGCACCTAGTCTAAAAGTAGACAATTACAATGATAATGTGGCAGCATTTAAGGGGGAACCACTGCCAAAGTAGGCAATTGTACACTTGAGCACCCAAATTAGAATAATACATTTCCATGTCAATGATCGTACAATTGCATAGCACTGCTTGTTCAAACATGTTGCGTGTGTCGTGTGCAATGTATCAAATAAAACATTATGTTATTACTGCAGTGCTATAGGGTGAGTATAATTTGGTTGTGTCCAACATAATTAATTTTGATAAATAATCAAATATCATGGTCCAGCAAATGAACATTGATAGAGAAAATGTGACCATGAAATATTTTATTATAAATATCCTATTCTCTTTCTAATGGGAATTTGTTGTGCTGCATGAAATAGGACAGAAAACGTTATTGGCCTgtgttttacatatatatattatttacctGTTTAGCTTACTGTTTTCTTATCTGGCCATTAGATGTCCCAGTTTGCCTTATGTTACTTATTTAAGAACAAgaacatataatttattataATTGACCAATAAAAAGCAACCCAAGATAGGCAGCCAAGAAACTTGGCCCGTCGGGGTTCATTCCAGTATTCCCACATCCAGAACACTGTTATTGTTGACAATCACTGCCTGTTATTTCTTTAGTAAATATGGTCTTCATTCTATTCcatgaactgcattgttggttaagggcttgtaagtaagcatttcactgtaaggtctactacacctgttgtattcggcgcatgtgacaaatacaatttgatttgatttgatgttagaATTGTATCACTGCAGACTTTGTCATCATAACAAAGTAGAACCTTTTTTTCCCTGACTAATCTGGTGCTTAAAGGACAGTTAGACATGTCCTGTATCCTGTGGGTCCGTGTGTGACGTGGGATGAGACAAGACAGAGGTAGTGAGTTGAGACCAGGTATATGTAGACCTAATATTGTATCATTTAAATACAGGTGCTCAGTAGTTTGTCTCATATCCACTCAGAAATAGGAATCTGTCCAAATGGTTTAGTTGGTGAGAATCATCAGTTGACTGATGTAAAGTGAGTCTGATCTAGTCCCTGTGTATCCATGCTGAAGGAACCCAGGTGGGAGGGCTCATTCtacaccctcctctgtctctcagcagtgtagcagcagcagtggcgcCAGGGCACTGACCTTCTCAGACACAACCATCACTCAACAATCTGCTCAGCcggtcccctcctcctccatccccctattCCTGTCTcacccacagctctctctctctctccatccccctacccctctccacccatctctctcttcctctgatgATGAGCCAGACCCAGGCTATGTGGAAGTCTCTGGTTCTCGGCAGCACTAGTCTTCAAACGTCACTTACCCTATATTAAGCAGTTTGTTTTTGCTACTTGTTTTGGTAGTTTGTGTTGATTAAACCAATTTAATTGTgtttctccctctgctctgtctcccccccccccccctccctctgagCTGTCTCCTGAGCTCTTTTGCAGGACATTTGGCAGCTCTGAGCAGGAAAGGAGCAGACTTTCTCCAGCAAGACTTTCCGTGCATTTACTGCAATCCATTATACACCCCAAACACAGACGTGTGGCCGGATGACAACACGCATCCAGACCTCCGGTCTTCATCGTCCTGACGACAGAGTACCGGTGATTATAAATCTGCGTGATTGGGGCCTTTCCCTTGGCCAATTAGATGAGGTGAAATATGGGAGGTCACGCCTGCTGTGGAGGCAGCATGCAACCAGCGCTCTGTTTACTTAAATGTCCCTTATCAGCCCCCATCAGAGGACCTGGGACACAAAGAGAAGGGGCCCAGAGTGTGTCCCTTTGTTCACAGAAATGTGCCCTTTCTACAAGATTTCCTCCCTTGCGTTTTGTGGCATTCCTTTAGCAATGGACATCGACATTGTTAAGATAAATAGAACAGTTGGATAATGGATGAAAATATTCTAAACTTTTAAAATTTGTTATAGTTCATCAGATATTGACTGAATTATAGTTCAGGGATTCTGGTGGGAATTCAGGTATTCAATGTATTGTCAAATGCCACTTTTTTTGGGGGAATGCACTCATATATACCGTTACTTATTGTATCATGTATTTTTAAAATTATTGTATGTTAAAATAACGAAAAACAGATGTGCCTACTTTGCATAAACACACTGGGTGGATTTGCATATATGAATACATTAACATGAAGGGGTGGAACAGGGCTGCAATGACCAAACACTTGCTCTGTCAactctacctgcactcacctgtgcTGTCTAAACTGTCTCATAAATTACTGTTGTTGCCCCGTTCTGTTGCATAATTCTACAAGTGTGTCAATAGTTTGATTCAAAATCAACACACTTGGCTCTAGATTACACCTATCTGTACATACTTTATGTTGTTTGCAAGATCAGATGTAATATCACTTTAATCCAAGTCTTAAATTGCTTTCGTTTCAGATAATCTAAAttgtaaacatttcaactgtatctttatttttatttaacctttatttaactaggcaagtcagttaaagaacaaattcctatttacaatgacggcctacaccggaaaaacccggacgatgctgggccaattgtgtgtcaccctatgggactcccaatcacggccagttgtgatacagactggattcgaaccagggtgtctgtagtgacgcctcaagcactgagatgcagtgccttagaccgctgcacatTAAATTATAA

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU448221 True 3021 lncRNA 0.41 2 36282731 36288452

Neighbor

gene id symbol gene type direction distance location
LOC110523692 LOC106564846 coding upstream 162626 36085124 ~ 36120105 (+)
LOC110523693 ggcx coding upstream 226696 36042518 ~ 36056035 (+)
you2 you2 coding upstream 247925 36033260 ~ 36034806 (+)
slc20a1b LOC106564912 coding upstream 263377 36006206 ~ 36019354 (+)
drg1 drg1 coding upstream 315987 35963201 ~ 35966744 (+)
LOC110523704 LOC100136432 coding downstream 82914 36371366 ~ 36376388 (+)
LOC110523708 LOC106564755 coding downstream 170350 36458802 ~ 36469839 (+)
antxr1b LOC105014916 coding downstream 230953 36519405 ~ 36569643 (+)
LOC110523711 LOC106564742 coding downstream 318950 36607402 ~ 36614580 (+)
LOC110523714 LOC106565816 coding downstream 351204 36639656 ~ 36645198 (+)
G395041 nfkbil1 non-coding upstream 21504 36260151 ~ 36261227 (+)
G394970 LOC106563191 non-coding upstream 160800 36120306 ~ 36121931 (+)
G394958 NA non-coding upstream 173846 36099373 ~ 36108885 (+)
G394904 NA non-coding upstream 247386 35943336 ~ 36035345 (+)
G394923 NA non-coding upstream 299000 35977856 ~ 35983731 (+)
G395062 NA non-coding downstream 13998 36302450 ~ 36302649 (+)
G395087 NA non-coding downstream 46700 36335152 ~ 36336353 (+)
G395109 NA non-coding downstream 78163 36366615 ~ 36367808 (+)
G395110 NA non-coding downstream 80231 36368683 ~ 36368972 (+)
G395119 NA non-coding downstream 97298 36385750 ~ 36401357 (+)
G395005 LOC106564805 other upstream 76115 36202901 ~ 36206616 (+)
G394910 NA other upstream 277902 35966937 ~ 36004829 (+)
G394882 NA other upstream 376950 35905112 ~ 35905781 (+)
G392776 NA other upstream 2134030 34147474 ~ 34150795 (+)
G396022 kdm2b other downstream 676632 36965084 ~ 36965652 (+)
m17 m17 other downstream 1120749 37409195 ~ 37411565 (+)
srsf9 sfrs9 other downstream 1630242 37917781 ~ 37921282 (+)
LOC110523777 LOC106563114 other downstream 3025882 39297942 ~ 39317727 (+)
G399169 gpat3 other downstream 3473664 39762116 ~ 39765843 (+)

Expression


Co-expression Network