G395109


Basic Information

Item Value
gene id G395109
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 36366615 ~ 36367808 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU448296
GGGAGTTCAGACCCTCTGATAAAGGCTACATCAGTGCTTCGTGCGCAGAGTGGTTTGGATTGCAAAACAAAGCCATCCTTGAACTCCTTGCCTAATTAGACGAAAGGCACATTTCAAGCGACTTCATGTATGAcctggatagatggcagcattcgtgcaaaactgaaagcgtgaaccactgcatttaatcatggcaaggagACTGGGAAATGGATGTGTAGCCTACAAACAGACCAGTTGCGACCTCCAGCAATCAAAGAGGAAAAACGACAatacagggacaaggtggagtcgcaattcaacggctcagatacAAGACGTAGGCTATGAGGCAGGGACTCCATACGGATTACAACGGGAAAGCCAGCGCCTCGAGGAAAACAGCATTGTGCCCCCGACGCTTGAAGTCGTCCGCATGtttcccagccgaaacagttcgtagagtttgtgcatatattataaCGATGTTTTGGACTTCGGTGAGTTTTTCCCCCGCTGTTCAGGAACAGGAACATTTTTCTGGAGGCAAGCGATGTTcgagccgaagtctacgccccttcgttggtgattggtcaacaatagggattcttcaataaagtattTGTTATCATTCAAGTTAGATTAGATGCACGAATGAGATCTATTTGTCAAAACGTGAAAATTAAtgacagagttacagttcaaaggaaatcagtcaattgaaatacattcattaggccctaatctatggatttcacatgactgggaatacagatatgcatctataggtcacagataccttaaaaaaaggcaGGGGCGTAgacaaccagtcagtatctggtgtgaccaccatttgcctcatgcagcgcaacacatctccttcacatagagttaatcaggctgttggttgtggcctgtggaatgttgtcccactcttcaatggctgtgtaaagttgctggatattggcgggaactggaacatgcttttgtacacgtcgatccagagcatcccaaacatggtcaatgggtgacatgtctggtgattatacaggccatggaagaactggaacatttccagcttccaggaattgtgtacagatgtgcattatcatgctgaaacatgaggtgatggcggcggatgaatggcacgacaatggcgccccaggatcttgtcacagtatctctgttgCTTCAAATTGGCATCAATAAaattgc

Function

NR:

description
Transposable element Tcb1 transposase, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU448296 True 1194 lncRNA 0.45 1 36366615 36367808

Neighbor

gene id symbol gene type direction distance location
LOC110523692 LOC106564846 coding upstream 246510 36085124 ~ 36120105 (+)
LOC110523693 ggcx coding upstream 310580 36042518 ~ 36056035 (+)
you2 you2 coding upstream 331809 36033260 ~ 36034806 (+)
slc20a1b LOC106564912 coding upstream 347261 36006206 ~ 36019354 (+)
drg1 drg1 coding upstream 399871 35963201 ~ 35966744 (+)
LOC110523704 LOC100136432 coding downstream 3558 36371366 ~ 36376388 (+)
LOC110523708 LOC106564755 coding downstream 90994 36458802 ~ 36469839 (+)
antxr1b LOC105014916 coding downstream 151597 36519405 ~ 36569643 (+)
LOC110523711 LOC106564742 coding downstream 239594 36607402 ~ 36614580 (+)
LOC110523714 LOC106565816 coding downstream 271848 36639656 ~ 36645198 (+)
G395087 NA non-coding upstream 30262 36335152 ~ 36336353 (+)
G395062 NA non-coding upstream 63966 36302450 ~ 36302649 (+)
G395035 NA non-coding upstream 78163 36282731 ~ 36288452 (+)
G395041 nfkbil1 non-coding upstream 105388 36260151 ~ 36261227 (+)
G394970 LOC106563191 non-coding upstream 244684 36120306 ~ 36121931 (+)
G395110 NA non-coding downstream 875 36368683 ~ 36368972 (+)
G395119 NA non-coding downstream 17942 36385750 ~ 36401357 (+)
G395124 NA non-coding downstream 34656 36402464 ~ 36403209 (+)
G395133 NA non-coding downstream 37729 36405537 ~ 36405748 (+)
G395140 NA non-coding downstream 47282 36415090 ~ 36415453 (+)
G395034 NA other upstream 65325 36280300 ~ 36301290 (+)
G395005 LOC106564805 other upstream 159999 36202901 ~ 36206616 (+)
G394910 NA other upstream 361786 35966937 ~ 36004829 (+)
G394882 NA other upstream 460834 35905112 ~ 35905781 (+)
G396022 kdm2b other downstream 597276 36965084 ~ 36965652 (+)
m17 m17 other downstream 1041393 37409195 ~ 37411565 (+)
srsf9 sfrs9 other downstream 1550886 37917781 ~ 37921282 (+)
LOC110523777 LOC106563114 other downstream 2946526 39297942 ~ 39317727 (+)
G399169 gpat3 other downstream 3394308 39762116 ~ 39765843 (+)

Expression


Co-expression Network