G395145 (LOC106564765)


Basic Information

Item Value
gene id G395145
gene name LOC106564765
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 36425712 ~ 36430334 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU448349
TGCAAGTATATCAAACATATTGTAAGATGATATCTTTGCAGTCCTTCAAGTCCCTGACAGTGTGTGTTTAACCTCTACCCCACTCCCACTCGGTGCTCAACGCCCAGCCAAGTCCCAGTCGCACGTTTTTAAAGCCTCTGTAGAGTGACTGCAACTCCTTCTTGGTGAACTGGGTCTGGACCTGGAGCTGTTCCAAGCCTTCAGGCTGGTGACGAACAGTAGAAAGCTCCAATTCACAGTCGCTACTCTCACCTGGCCCCTGAGTGTTTGTGGTGCTGTCAATGATCCATTTGACGAGGCAGCACTTCATCAGAGATTTACGAGTGATTCGGGGCTTCTGCCatttccctctgtcctccctctgtcctcctgggCTGGGCTCC

Function

NR:

description
PREDICTED: calsenilin-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU448349 True 383 lncRNA 0.51 2 36425712 36430334

Neighbor

gene id symbol gene type direction distance location
LOC110523704 LOC100136432 coding upstream 49324 36371366 ~ 36376388 (+)
LOC110523692 LOC106564846 coding upstream 305607 36085124 ~ 36120105 (+)
LOC110523693 ggcx coding upstream 369677 36042518 ~ 36056035 (+)
you2 you2 coding upstream 390906 36033260 ~ 36034806 (+)
slc20a1b LOC106564912 coding upstream 406358 36006206 ~ 36019354 (+)
LOC110523708 LOC106564755 coding downstream 28468 36458802 ~ 36469839 (+)
antxr1b LOC105014916 coding downstream 89071 36519405 ~ 36569643 (+)
LOC110523711 LOC106564742 coding downstream 177068 36607402 ~ 36614580 (+)
LOC110523714 LOC106565816 coding downstream 209322 36639656 ~ 36645198 (+)
LOC110522857 NA coding downstream 219614 36649948 ~ 36651750 (+)
G395142 NA non-coding upstream 7790 36417720 ~ 36417922 (+)
G395141 NA non-coding upstream 8786 36416694 ~ 36416926 (+)
G395140 NA non-coding upstream 10259 36415090 ~ 36415453 (+)
G395133 NA non-coding upstream 19964 36405537 ~ 36405748 (+)
G395124 NA non-coding upstream 22503 36402464 ~ 36403209 (+)
G395157 NA non-coding downstream 11101 36441435 ~ 36441756 (+)
G395165 NA non-coding downstream 25919 36456253 ~ 36456453 (+)
G395184 NA non-coding downstream 53661 36483995 ~ 36484221 (+)
G395641 LOC106565823 non-coding downstream 77699 36508033 ~ 36508278 (+)
G395672 NA non-coding downstream 143405 36573739 ~ 36577200 (+)
G395034 NA other upstream 124422 36280300 ~ 36301290 (+)
G395005 LOC106564805 other upstream 219096 36202901 ~ 36206616 (+)
G394910 NA other upstream 420883 35966937 ~ 36004829 (+)
G394882 NA other upstream 519931 35905112 ~ 35905781 (+)
G396022 kdm2b other downstream 534750 36965084 ~ 36965652 (+)
m17 m17 other downstream 978867 37409195 ~ 37411565 (+)
srsf9 sfrs9 other downstream 1488360 37917781 ~ 37921282 (+)
LOC110523777 LOC106563114 other downstream 2884000 39297942 ~ 39317727 (+)
G399169 gpat3 other downstream 3331782 39762116 ~ 39765843 (+)

Expression


Co-expression Network