Gene
RNA
| Item | Value |
|---|---|
| gene id | G398548 |
| gene name | LOC106563918 |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048569.1 |
| NCBI id | CM023223.2 |
| chromosome length | 100798064 |
| location | 39198861 ~ 39201487 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| PREDICTED: nuclear pore complex protein Nup155-like isoform X2 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU452153 | True | 834 | lncRNA | 0.55 | 6 | 39198861 | 39201487 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110522932 | LOC106563304 | coding | upstream | 7374 | 39190465 ~ 39191487 (+) |
| rfx3 | LOC106563985 | coding | upstream | 134352 | 39008047 ~ 39067301 (+) |
| glis3 | LOC106564006 | coding | upstream | 193045 | 38973438 ~ 39005816 (+) |
| bmpr1bb | LOC106564072 | coding | upstream | 517692 | 38569703 ~ 38681169 (+) |
| pdlim5b | LOC106564051 | coding | upstream | 629707 | 38496984 ~ 38569154 (+) |
| LOC110523777 | LOC106563114 | coding | downstream | 96455 | 39297942 ~ 39317727 (+) |
| LOC110523778 | NA | coding | downstream | 122154 | 39323641 ~ 39327183 (+) |
| nadk2 | LOC106563865 | coding | downstream | 129670 | 39331157 ~ 39338343 (+) |
| LOC110523779 | LOC106563815 | coding | downstream | 145622 | 39347109 ~ 39371739 (+) |
| LOC100653455 | LOC106563802 | coding | downstream | 177641 | 39379128 ~ 39390166 (+) |
| G398518 | LOC107373903 | non-coding | upstream | 47793 | 39150527 ~ 39151068 (+) |
| G398516 | NA | non-coding | upstream | 49522 | 39148526 ~ 39149339 (+) |
| G398511 | NA | non-coding | upstream | 57649 | 39140975 ~ 39141212 (+) |
| G398497 | NA | non-coding | upstream | 67474 | 39131119 ~ 39131387 (+) |
| G398485 | NA | non-coding | upstream | 74558 | 39124099 ~ 39124303 (+) |
| G398577 | NA | non-coding | downstream | 82099 | 39283586 ~ 39284402 (+) |
| G398635 | NA | non-coding | downstream | 115783 | 39317270 ~ 39339198 (+) |
| G398571 | NA | non-coding | downstream | 118205 | 39319692 ~ 39320238 (+) |
| G398717 | NA | non-coding | downstream | 304547 | 39506034 ~ 39506363 (+) |
| G398776 | NA | non-coding | downstream | 414273 | 39615760 ~ 39615978 (+) |
| srsf9 | sfrs9 | other | upstream | 1277625 | 37917781 ~ 37921282 (+) |
| m17 | m17 | other | upstream | 1787962 | 37409195 ~ 37411565 (+) |
| G396022 | kdm2b | other | upstream | 2233209 | 36965084 ~ 36965652 (+) |
| G395034 | NA | other | upstream | 2897571 | 36280300 ~ 36301290 (+) |
| G395005 | LOC106564805 | other | upstream | 2992245 | 36202901 ~ 36206616 (+) |
| G399169 | gpat3 | other | downstream | 560629 | 39762116 ~ 39765843 (+) |
| G399919 | NA | other | downstream | 1240268 | 40441755 ~ 40442086 (+) |
| G400154 | NA | other | downstream | 1663442 | 40864929 ~ 40881126 (+) |
| G400267 | LOC106561151 | other | downstream | 1904037 | 41105524 ~ 41106754 (+) |
