G398571


Basic Information

Item Value
gene id G398571
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 39319692 ~ 39320238 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU452178
agtgatgaGTCTCtttgtaggcagcagcctctgagttagtgaggccttgagatagaatctgtttttcagtcacTCGGTCCTAGCTTAGATGCAccatgtactgacctcgccttctggatggtagcggggggaacaggcagtggctcgggtggtttttgtccttgatgatcgttttggccttcctgtgacatcaggtgctgtaggtatcttggagggcaggtagtttgcccccggtgatgcgttgtgcagttgccgtaccttTACGGACAATTATTTtgccctcatggcttggtttttgctctgacatacactgtaaactgtgggacattatgcagacaggtgtgtgcctttccaaatcatgtccaattgattttaccacaggtggactctaatcaagttgtagaaacatctcaaggatgatcaatggaaacaggatgcacctgagctcaattttgagtctcaaagcaaagggtctgaatacttaaaaaaataaataagtccaa

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU452178 True 503 lncRNA 0.46 2 39319692 39320238

Neighbor

gene id symbol gene type direction distance location
LOC110523777 LOC106563114 coding upstream 1965 39297942 ~ 39317727 (+)
LOC110522932 LOC106563304 coding upstream 128205 39190465 ~ 39191487 (+)
rfx3 LOC106563985 coding upstream 255183 39008047 ~ 39067301 (+)
glis3 LOC106564006 coding upstream 313876 38973438 ~ 39005816 (+)
bmpr1bb LOC106564072 coding upstream 638523 38569703 ~ 38681169 (+)
LOC110523778 NA coding downstream 3403 39323641 ~ 39327183 (+)
nadk2 LOC106563865 coding downstream 10919 39331157 ~ 39338343 (+)
LOC110523779 LOC106563815 coding downstream 26871 39347109 ~ 39371739 (+)
LOC100653455 LOC106563802 coding downstream 58890 39379128 ~ 39390166 (+)
cfap53 cfap53 coding downstream 85163 39405401 ~ 39409687 (+)
G398577 NA non-coding upstream 35290 39283586 ~ 39284402 (+)
G398548 LOC106563918 non-coding upstream 118205 39198861 ~ 39201487 (+)
G398518 LOC107373903 non-coding upstream 168624 39150527 ~ 39151068 (+)
G398516 NA non-coding upstream 170353 39148526 ~ 39149339 (+)
G398511 NA non-coding upstream 178480 39140975 ~ 39141212 (+)
G398717 NA non-coding downstream 185796 39506034 ~ 39506363 (+)
G398776 NA non-coding downstream 295522 39615760 ~ 39615978 (+)
nkx6.1 nkx6-1 non-coding downstream 314413 39631643 ~ 39635104 (+)
G399097 NA non-coding downstream 326284 39646522 ~ 39646795 (+)
G399110 NA non-coding downstream 339467 39659705 ~ 39659922 (+)
srsf9 sfrs9 other upstream 1398456 37917781 ~ 37921282 (+)
m17 m17 other upstream 1908793 37409195 ~ 37411565 (+)
G396022 kdm2b other upstream 2354040 36965084 ~ 36965652 (+)
G395034 NA other upstream 3018402 36280300 ~ 36301290 (+)
G399169 gpat3 other downstream 441878 39762116 ~ 39765843 (+)
G399919 NA other downstream 1121517 40441755 ~ 40442086 (+)
G400154 NA other downstream 1544691 40864929 ~ 40881126 (+)
G400267 LOC106561151 other downstream 1785286 41105524 ~ 41106754 (+)
LOC110523840 LOC106562575 other downstream 2041758 41343546 ~ 41370262 (+)

Expression


Co-expression Network