G398717


Basic Information

Item Value
gene id G398717
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 39506034 ~ 39506363 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU452345
GGTATCAGTGTAACACAGGCAATCACAGGCTTTGATAaacagctacagtggggagaacaagtatttgatacactgccgactttgcaggttttcctacttacaaagcatgtagaggtctgtaatttttatcataggtacactacaaCGGTGAGAGACGGaacctaaaacaaaaatccagaaaatcacattgtatgatttttaagtaattaatttgcatgacataagtatttgatcacctaccaaccagtaagaattccagctctcacagacctgttagtttttctttaagaagccctcctgttctccactcattacctgtattaactgcac

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU452345 True 330 lncRNA 0.38 1 39506034 39506363

Neighbor

gene id symbol gene type direction distance location
myo5b LOC106563782 coding upstream 3394 39411380 ~ 39502640 (+)
cfap53 cfap53 coding upstream 96347 39405401 ~ 39409687 (+)
LOC100653455 LOC106563802 coding upstream 115868 39379128 ~ 39390166 (+)
LOC110523779 LOC106563815 coding upstream 134295 39347109 ~ 39371739 (+)
nadk2 LOC106563865 coding upstream 167691 39331157 ~ 39338343 (+)
il7r LOC106563758 coding downstream 3919 39510282 ~ 39521869 (+)
LOC110523785 LOC106563715 coding downstream 66395 39572758 ~ 39577381 (+)
eri1 LOC106563692 coding downstream 75429 39581792 ~ 39584528 (+)
mfhas1 LOC106563686 coding downstream 79154 39585517 ~ 39612603 (+)
rl17 LOC106563677 coding downstream 111163 39617526 ~ 39622863 (+)
G398635 NA non-coding upstream 166836 39317270 ~ 39339198 (+)
G398571 NA non-coding upstream 185796 39319692 ~ 39320238 (+)
G398577 NA non-coding upstream 221632 39283586 ~ 39284402 (+)
G398548 LOC106563918 non-coding upstream 304547 39198861 ~ 39201487 (+)
G398518 LOC107373903 non-coding upstream 354966 39150527 ~ 39151068 (+)
G398776 NA non-coding downstream 109397 39615760 ~ 39615978 (+)
nkx6.1 nkx6-1 non-coding downstream 128288 39631643 ~ 39635104 (+)
G399097 NA non-coding downstream 140159 39646522 ~ 39646795 (+)
G399110 NA non-coding downstream 153342 39659705 ~ 39659922 (+)
G399119 NA non-coding downstream 162802 39669165 ~ 39669387 (+)
LOC110523777 LOC106563114 other upstream 188319 39297942 ~ 39317727 (+)
srsf9 sfrs9 other upstream 1584798 37917781 ~ 37921282 (+)
m17 m17 other upstream 2095135 37409195 ~ 37411565 (+)
G396022 kdm2b other upstream 2540382 36965084 ~ 36965652 (+)
G395034 NA other upstream 3204744 36280300 ~ 36301290 (+)
G399169 gpat3 other downstream 255753 39762116 ~ 39765843 (+)
G399919 NA other downstream 935392 40441755 ~ 40442086 (+)
G400154 NA other downstream 1358566 40864929 ~ 40881126 (+)
G400267 LOC106561151 other downstream 1599161 41105524 ~ 41106754 (+)
LOC110523840 LOC106562575 other downstream 1855633 41343546 ~ 41370262 (+)

Expression


Co-expression Network