G399097


Basic Information

Item Value
gene id G399097
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 39646522 ~ 39646795 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU452779
ttatgctttcagtactagattcattttatgatcctttgattgggtggatagCATGTCATGCTGACCAAGAGCTCtaataggttggaggatgtcctccagaaattgtcataattactatgtaagtctatggaagggggtgagaaccatgagcctcctaggttttgtattgaagtcaatgtacccagaggaggacagaagctaaccgctacaccatggtgctaccctacagagtgctgttaaggctactgtagaccttcattctAAAACAGTGTGt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU452779 True 274 lncRNA 0.43 1 39646522 39646795

Neighbor

gene id symbol gene type direction distance location
nkx6.1 nkx6-1 coding upstream 11516 39631643 ~ 39635104 (+)
rl17 LOC106563677 coding upstream 23659 39617526 ~ 39622863 (+)
LOC118964758 NA coding upstream 23836 39622617 ~ 39622686 (+)
LOC118964760 NA coding upstream 26945 39619517 ~ 39619577 (+)
LOC118964757 NA coding upstream 27343 39619110 ~ 39619179 (+)
LOC110523790 NA coding downstream 126266 39773061 ~ 39776378 (+)
helq LOC106563626 coding downstream 136755 39783550 ~ 39793551 (+)
hpse hpse coding downstream 150963 39797758 ~ 39808642 (+)
btc LOC106563612 coding downstream 168788 39815583 ~ 39822369 (+)
amacr amacr coding downstream 195412 39842207 ~ 39901407 (+)
G398776 NA non-coding upstream 30544 39615760 ~ 39615978 (+)
G398717 NA non-coding upstream 140159 39506034 ~ 39506363 (+)
G398635 NA non-coding upstream 307324 39317270 ~ 39339198 (+)
G398571 NA non-coding upstream 326284 39319692 ~ 39320238 (+)
G399110 NA non-coding downstream 12910 39659705 ~ 39659922 (+)
G399119 NA non-coding downstream 22370 39669165 ~ 39669387 (+)
G399177 NA non-coding downstream 112190 39758985 ~ 39759234 (+)
G399174 NA non-coding downstream 114900 39761695 ~ 39761944 (+)
LOC110523777 LOC106563114 other upstream 328807 39297942 ~ 39317727 (+)
srsf9 sfrs9 other upstream 1725286 37917781 ~ 37921282 (+)
m17 m17 other upstream 2235623 37409195 ~ 37411565 (+)
G396022 kdm2b other upstream 2680870 36965084 ~ 36965652 (+)
G395034 NA other upstream 3345232 36280300 ~ 36301290 (+)
G399169 gpat3 other downstream 115321 39762116 ~ 39765843 (+)
G399919 NA other downstream 794960 40441755 ~ 40442086 (+)
G400154 NA other downstream 1218134 40864929 ~ 40881126 (+)
G400267 LOC106561151 other downstream 1458729 41105524 ~ 41106754 (+)
LOC110523840 LOC106562575 other downstream 1715201 41343546 ~ 41370262 (+)

Expression


Co-expression Network