G400267 (LOC106561151)


Basic Information

Item Value
gene id G400267
gene name LOC106561151
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 41105524 ~ 41106754 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU454035
ACTGACACTTCATTTACATAGGTCTTCTCACATGTCTTTTCAGCAATTTAATACAAATAtgatatgttttttatttgtgtACTGTTTGCCTTTTAATATATAATACATTTAATACTGATGACAAAACACTGGATttaatttacaaaataaaataacaatataacagttaCAATCCTTTATAATAACAGTTAACAATAATTATATTCAAATAAATCATACATTTTATTGTTTTAGATAGAAAGTAAAAAGACAATTTTTGTATTTTCAGTCATCGTAACAGTCTCCGAGCCTGAGACAGAGTCTGCCTGTATAAGGTGTCTTTACAGTGTAGAACGAGACATGAGGACTACATGCTCTGTTGTCAGTGAGGAACCATAGGCACCATAACCCAGGGTTATTATTACAGACCAATCTGACCCTCTGTCCTTCAGTGACTGCATGCACTCTTCTCCTCTATGATCTAGCACTGATCTGTCCTCCCCACTAGGGGGCAGTCAGTCACCGCAAAGTGCAAATCGGAACTTCAGTTTTGGTGGTCCCCAGTGGACCTTCTTGCTAACGTAATGTTCAGTCCCTTTCATAGCTCGCAGCCCTGCTAGTAAAACCCACCAGAAGAGCATTAGAGTCAGGAGCAGATATCTAACCATATCTAACCATGAAGAGTCTCTAACCCACggctttccaaccctgttcctggagagctaccgtcctgttctaataattagctggttgatgagCTGAATTGGGtaagttacaactggggttgcaTTAAAcgcctacaggagggtagctctccaggaacagggttggtgaGCCCTGCTCTATCCCCTCTCAGCATTTAGAGGAGGGGAAGAACTTCCCAGGCGAGGGGAACTTGAAGCCATTCCCAGAGGGCAGTCTGACAGGGTGTGGGGGTGCTCCAGGACTACCTCCCCTGGAGGAGTCAGTAGCAGTCTGAGGAGGAGGCGCCTCTGGTGGTTTTGAACCCAGCATTCGATGTCTGTTAAGCAGGTTGATGGGGCTCTGGGGCCCCTCAGCGTCCTGGTTCTTGTTGTTGGACCCATGTcttggagagaggtggagaagcccCAGGACATCTTTCTGGACCGTGCTCATCTTCTTCCCCCCATCTCGGAGCACTCTGCCTGGGCCGGGAACCTCCTGCCTCTGGGTGGCATTGGACCAGAAGGTTTTCAGGTTGTGGATGGCCTGGACCCTCTCGTCCACCAGG

Function

NR:

description
LOW QUALITY PROTEIN: tetratricopeptide repeat protein 28-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU454035 True 1231 TUCP 0.46 1 41105524 41106754

Neighbor

gene id symbol gene type direction distance location
LOC110523829 LOC106562660 coding upstream 15933 41073428 ~ 41092078 (+)
zgc:56235 LOC106562702 coding upstream 77701 41016201 ~ 41027823 (+)
LOC110522942 LOC106562732 coding upstream 165775 40927202 ~ 40939749 (+)
LOC110523823 ckmt2 coding upstream 189933 40909172 ~ 40915591 (+)
LOC110522941 rasgrf2 coding upstream 196785 40830985 ~ 40908739 (+)
LOC110523837 LOC106562632 coding downstream 164952 41271706 ~ 41275385 (+)
LOC118964605 NA coding downstream 224550 41331304 ~ 41336397 (+)
LOC110523840 LOC106562575 coding downstream 236792 41343546 ~ 41370262 (+)
ccdc62 ccdc62 coding downstream 335476 41442230 ~ 41451161 (+)
LOC110523846 LOC106562538 coding downstream 344551 41451305 ~ 41468484 (+)
G400256 NA non-coding upstream 34354 41070869 ~ 41071170 (+)
G400255 NA non-coding upstream 35504 41069798 ~ 41070020 (+)
G400189 pi4ka non-coding upstream 143583 40959108 ~ 40961941 (+)
G400185 NA non-coding upstream 156474 40948843 ~ 40949050 (+)
G400268 NA non-coding downstream 2039 41108793 ~ 41109020 (+)
G400269 NA non-coding downstream 3194 41109948 ~ 41110300 (+)
G400270 LOC106561151 non-coding downstream 3865 41110619 ~ 41110857 (+)
G400271 LOC106561151 non-coding downstream 4229 41110983 ~ 41111291 (+)
G400272 NA non-coding downstream 4642 41111396 ~ 41111960 (+)
G400154 NA other upstream 224398 40864929 ~ 40881126 (+)
G399919 NA other upstream 663438 40441755 ~ 40442086 (+)
G399169 gpat3 other upstream 1339681 39762116 ~ 39765843 (+)
LOC110523777 LOC106563114 other upstream 1787809 39297942 ~ 39317727 (+)
srsf9 sfrs9 other upstream 3184288 37917781 ~ 37921282 (+)
G400632 NA other downstream 663286 41770040 ~ 41770362 (+)
G400681 NA other downstream 845869 41952623 ~ 41957094 (+)
G400759 NA other downstream 927127 42033881 ~ 42035606 (+)
G401607 NA other downstream 953378 42060132 ~ 42069044 (+)

Expression


Co-expression Network