G417144


Basic Information

Item Value
gene id G417144
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 55769676 ~ 55769905 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU472848
CGTAGATAGGCAGGGAAAATGACAAGGGTTGATCTACCACACACCCGATAAATTAGCCTAGGTGTCTTCTTAGAAATATCCAGatacatttcagttttttttccTATAGGGCTATGAGGAGGTATGCTACATTGTTAGCTTGCCTAACAATTGCCCAACTAAACAAATATGTTTTCGATTTAGCTACAGTGACTAATTACATACAATAGAAACAGCTGGTGAAATGTTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU472848 True 230 lncRNA 0.37 1 55769676 55769905

Neighbor

gene id symbol gene type direction distance location
LOC110524077 tm2d1 coding upstream 264935 55487820 ~ 55504741 (+)
LOC110524076 LOC106613559 coding upstream 501316 55257674 ~ 55268360 (+)
LOC110524074 tal1 coding upstream 514563 55242498 ~ 55255113 (+)
LOC110524073 LOC106613986 coding upstream 530015 55237867 ~ 55239661 (+)
LOC118964621 LOC106613552 coding upstream 672419 55082899 ~ 55097257 (+)
LOC110524079 atpaf1 coding downstream 57302 55827207 ~ 55838164 (+)
LOC110524081 rab3b coding downstream 68655 55838512 ~ 55848072 (+)
LOC110524082 LOC106613566 coding downstream 79308 55849213 ~ 55864861 (+)
LOC110524084 LOC106613569 coding downstream 114974 55884879 ~ 55921055 (+)
LOC110524085 LOC106613570 coding downstream 163072 55932977 ~ 56105281 (+)
G417092 NA non-coding upstream 31311 55736656 ~ 55738365 (+)
G417093 NA non-coding upstream 35324 55733942 ~ 55734352 (+)
G417095 NA non-coding upstream 37954 55731362 ~ 55731722 (+)
G417120 NA non-coding upstream 43066 55725492 ~ 55726610 (+)
G417045 NA non-coding upstream 160849 55607935 ~ 55608827 (+)
G417145 NA non-coding downstream 595 55770500 ~ 55770733 (+)
G417147 NA non-coding downstream 5110 55775015 ~ 55775224 (+)
G417151 NA non-coding downstream 13271 55783176 ~ 55783667 (+)
G417212 NA non-coding downstream 118132 55888037 ~ 55945283 (+)
G416857 NA other upstream 444405 55324645 ~ 55325271 (+)
G415946 NA other upstream 1156534 54590074 ~ 54613142 (+)
mutyh mutyh other upstream 1419061 54346481 ~ 54395448 (+)
G415809 NA other upstream 1439196 54330080 ~ 54330480 (+)
G415808 NA other upstream 1439896 54329195 ~ 54329780 (+)
G418077 LOC106613582 other downstream 847985 56617890 ~ 56628617 (+)
G418119 LOC106613588 other downstream 956280 56726185 ~ 56729821 (+)
G418251 rtca other downstream 1154019 56923924 ~ 56925176 (+)
LOC100135807 LOC106613594 other downstream 1173933 56943838 ~ 56958165 (+)
LOC110524119 LOC106613607 other downstream 1595459 57352343 ~ 57367627 (+)

Expression


Co-expression Network