G419976


Basic Information

Item Value
gene id G419976
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 58089993 ~ 58090475 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU475928
AGTTTGGTAATAtacttttaatacatttctaGTTAGCCGTGCTGGCCATGTAACAGATGACAAACTTTGATAGCAGGATTGCTGTATTTCATTTCAACATAAGTATAATGTCACCATCCTAGTAAAAAGTATAAGGAGCAATGCTATATTCCCTGCTGGAATTCTTGATGTGAAATACAAGTAACATAATCAACATGGAAAAATGCATAATGTTGATCAAAAAAGACCATTTGTAAGCATTTCTTCAACCACGACTAGCTATTTGACAGCAAGATTGTCATACAATGTGTTTTGGATTGACATATTCAAAGTCAGGTGACGACaaagaaaaataaaaatgaatggaCAGCAGAGGACAATGCAGGCGGTGAGCTAAAATGAATACATTCTCAATTTGGTGCTCGAAGCATCCAAATGACATTCCTAAAAACTGATAGAGGACTCCTCAAATAGAAAAGGATTCCTCAATATAAAACAGTCCCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU475928 True 483 lncRNA 0.35 1 58089993 58090475

Neighbor

gene id symbol gene type direction distance location
LOC110522977 NA coding upstream 3724 58084721 ~ 58086269 (+)
LOC110524136 LOC100136537 coding upstream 59099 58028761 ~ 58030894 (+)
LOC110524134 NA coding upstream 183333 57874805 ~ 57906660 (+)
sid1 NA coding upstream 186764 57902102 ~ 57903229 (+)
LOC118964626 LOC106595063 coding upstream 238475 57841922 ~ 57851518 (+)
LOC110524139 lsm4 coding downstream 29590 58120065 ~ 58124398 (+)
LOC110524140 LOC106613630 coding downstream 68046 58158521 ~ 58160134 (+)
LOC110524142 NA coding downstream 108912 58199387 ~ 58205370 (+)
LOC110524143 LOC106573897 coding downstream 221857 58312332 ~ 58370090 (+)
LOC118964627 NA coding downstream 310954 58401429 ~ 58404889 (+)
G419979 NA non-coding upstream 176 58089696 ~ 58089817 (+)
G419980 NA non-coding upstream 2096 58087666 ~ 58087897 (+)
G419971 NA non-coding upstream 3199 58086559 ~ 58086794 (+)
G419927 NA non-coding upstream 54417 58033435 ~ 58035576 (+)
G419901 NA non-coding upstream 104056 57985696 ~ 57985937 (+)
G419986 LOC106613627 non-coding downstream 14640 58105115 ~ 58106945 (+)
G419989 NA non-coding downstream 19191 58109666 ~ 58111526 (+)
G419975 NA non-coding downstream 34194 58124669 ~ 58124739 (+)
G419995 NA non-coding downstream 51414 58141889 ~ 58142108 (+)
G419999 NA non-coding downstream 61501 58151976 ~ 58153840 (+)
G419452 NA other upstream 190345 57884380 ~ 57899648 (+)
LOC110524119 LOC106613607 other upstream 722656 57352343 ~ 57367627 (+)
LOC100135807 LOC106613594 other upstream 1131828 56943838 ~ 56958165 (+)
G418251 rtca other upstream 1164817 56923924 ~ 56925176 (+)
G418119 LOC106613588 other upstream 1360172 56726185 ~ 56729821 (+)
G420117 LOC100846954 other downstream 322648 58411240 ~ 58418268 (+)
G420634 NA other downstream 852253 58942728 ~ 58944217 (+)
LOC110524226 LOC106573564 other downstream 2603782 60694220 ~ 60695905 (+)
G423922 NA other downstream 3631062 61721537 ~ 61722024 (+)
G424079 NA other downstream 4015048 62105523 ~ 62105872 (+)

Expression


Co-expression Network