G419986 (LOC106613627)


Basic Information

Item Value
gene id G419986
gene name LOC106613627
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 58105115 ~ 58106945 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU475940
CCAAGAACTAGTCTGCATTCTTTTTTTTATGACCCCCACCATGGAAAAATAAAGATGGAGAGGTGGATCCTATTTGTTAAAAAGGGACCACTTTGAAAAGGTGGTCAGAAGGGTAGAGATGAGCAACCATTGAAGAATTAAAGTTTTTCTTCAGAAATGGTCTTTTAGTTAAAGGATACTGTCTGGGACTTTGATGACATGACCGATGCCTTTCCAAAGTGGGGCCAGGTCTCCTTTGTAGCGCAGACAAATCTCATCTCCCTGCATCAACCGCATGTCACCTGAATCCGTCTTGGGCAAGGAGAAATAGGCAATCCGCTTTTTATTCAGCCCCAGGTCCCACCTGACCGTTATATTATCTTGGGTCTGGGACTCTTTAAGCTTTTTGTCGTAGTCGGCCTCCAGTTTGACAAGGGGGCCGAAGATGTTCTGGTACTGGTAGGCATCCTCGTAGCGCAGCAGCACATGTTGAGGCTCCTCGTCTACACCGGGCTTCTCCAGATCCTCCAGAGTGGCTGTTGGATTGTCCTGAGACGAGAGGATGCACAGGTTCAAGTTTTCATGCACATCCA

Function

NR:

description
PREDICTED: regulator of nonsense transcripts 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU475940 True 572 lncRNA 0.47 3 58105115 58106945

Neighbor

gene id symbol gene type direction distance location
LOC110522977 NA coding upstream 18846 58084721 ~ 58086269 (+)
LOC110524136 LOC100136537 coding upstream 74221 58028761 ~ 58030894 (+)
LOC110524134 NA coding upstream 198455 57874805 ~ 57906660 (+)
sid1 NA coding upstream 201886 57902102 ~ 57903229 (+)
LOC118964626 LOC106595063 coding upstream 253597 57841922 ~ 57851518 (+)
LOC110524139 lsm4 coding downstream 13120 58120065 ~ 58124398 (+)
LOC110524140 LOC106613630 coding downstream 51576 58158521 ~ 58160134 (+)
LOC110524142 NA coding downstream 92442 58199387 ~ 58205370 (+)
LOC110524143 LOC106573897 coding downstream 205387 58312332 ~ 58370090 (+)
LOC118964627 NA coding downstream 294484 58401429 ~ 58404889 (+)
G419976 NA non-coding upstream 14640 58089993 ~ 58090475 (+)
G419979 NA non-coding upstream 15298 58089696 ~ 58089817 (+)
G419980 NA non-coding upstream 17218 58087666 ~ 58087897 (+)
G419971 NA non-coding upstream 18321 58086559 ~ 58086794 (+)
G419927 NA non-coding upstream 69539 58033435 ~ 58035576 (+)
G419989 NA non-coding downstream 2721 58109666 ~ 58111526 (+)
G419975 NA non-coding downstream 17724 58124669 ~ 58124739 (+)
G419995 NA non-coding downstream 34944 58141889 ~ 58142108 (+)
G419999 NA non-coding downstream 45031 58151976 ~ 58153840 (+)
G420026 NA non-coding downstream 98919 58205864 ~ 58210110 (+)
G419452 NA other upstream 205467 57884380 ~ 57899648 (+)
LOC110524119 LOC106613607 other upstream 737778 57352343 ~ 57367627 (+)
LOC100135807 LOC106613594 other upstream 1146950 56943838 ~ 56958165 (+)
G418251 rtca other upstream 1179939 56923924 ~ 56925176 (+)
G418119 LOC106613588 other upstream 1375294 56726185 ~ 56729821 (+)
G420117 LOC100846954 other downstream 306178 58411240 ~ 58418268 (+)
G420634 NA other downstream 835783 58942728 ~ 58944217 (+)
LOC110524226 LOC106573564 other downstream 2587312 60694220 ~ 60695905 (+)
G423922 NA other downstream 3614592 61721537 ~ 61722024 (+)
G424079 NA other downstream 3998578 62105523 ~ 62105872 (+)

Expression


Co-expression Network