G419989


Basic Information

Item Value
gene id G419989
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 58109666 ~ 58111526 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU475946
TtttcaatgtttatttttgtttacaaAACCAACCACTAAATAGAAATACGGGAAAATACAGAGGAATTTGATATACATCTAGATGTCATAAAATATGATACACATCTAAGAACAATAGGCCTACACATTGAGACAGAGGAGCATTTATAGGTTGGTATAGATGTTAGGCATACTGGGATCGATGTATGGCGGAAGTTTATTTCTAAATAGTAACCTAGTGAATATTCTACAGCCCTTTCCATTATTACACAGGTCAGAAGAGTAGAGTAAGGAAATTGGTCACCTCAACAAGCATTTGGGGACATAGGCTTTCACATCTGTGAGTATAGTCACAATTTAATCACATATGTAATAACCAGTATGTGACAGTGTGAAGGAACACATAAACAACACAAAGACAAATCTCCATGGATACAGTCCATGAACACTCAAATACCCAGTAAACACAAAACATATTTTAGGCAACGAAATTGCTTATGACAGTTGTTCTGGGAAGAAGATACAATTAATCTGGATCAGGTACTGTATGTTATTATGTGGTTGTACCACGAGAGGTATGACATGTCTTTTAAAATATAGATACAACACGGGAAGAAGCCGTAATGGGAGACAACTGAAAACAAATACTGTGTTATGACAAAAATACAAGAACAAAACTAAACTAGCTCAATGACGTTCATAAAGCTGAAACATCCAAAACAATTCATTCAATAAAGTAAAAAAGAAAGTGCTACAGAAATGCAAGAACTGGGTCCAGTTCTCACCTGGCTGCCTACCTGCCCACTTCATCAAATGAAATCCTCGGCTGAGATAAGCATACTGATCTGATGAAGTTCATTGAACTTCAAACATCGCCATACAGCTATCAATCAAAGTTGGGCCCACAGACTTGAAAATATGAGATAGAACCAAACCGTTCCCTGATATAAATAACCGTAGTAAAAGGCACAACTACAACTTCTTATAAAAATACTCAAGAAACAATAAGAAATCCATGTAAACGAGCAGCATTTGGCTTTTG
>TU475944
TGATACACATCTAAGAACAATAGGCCTACACATTGAGACAGAGGAGCATTTATAGGTTGGTATAGATGTTAGGCATACTGGGATCGATGTATGGCGGAAGTTTATTTCTAAATAGTAACCTAGTGAATATTCTACAGCCCTTTCCATTATTACACAGGTCAGAAGAGTAGAGTAAGGAAATTGGTCACCTCAACAAGCATTTGGGGACATAGGCTTTCACATCTGTGAGTATAGTCACAATTTAATCACATATGTAATAACCAGTATGTGACAGTGTGAAGGAACACATAAACAACACAAAGACAAATCTCCATGGATACAGTCCATGAACACTCAAATACCCAGTAAACACAAAACATATTTTAGGCAACGAAATTGCTTATGACAGTTGTTCTGGGAAGAAGATACAATTAATCTGGATCAGGTACTGTATGTTATTATGTGGTTGTACCACGAGAGGTATGACATGTCTTTTAAAATATAGATACAACACGGGAAGAAGCCGTAATGGGAGACAACTGAAAACAAATACTGTGTTATGACAAAAATACAAGAACAAAACTAAACTAGCTCAATGACGTTCATAAAGCTGAAACATCCAAAACAATTCATTCAATAAAGTAAAAAAGAAAGTGCTACAGAAAT
>TU475945
TGATACACATCTAAGAACAATAGGCCTACACATTGAGACAGAGGAGCATTTATAGGTTGGTATAGATGTTAGGCATACTGGGATCGATGTATGGCGGAAGTTTATTTCTAAATAGTAACCTAGTGAATATTCTACAGCCCTTTCCATTATTACACAGGTCAGAAGAGTAGAGTAAGGAAATTGGTCACCTCAACAAGCATTTGGGGACATAGGCTTTCACATCTGTGAGTATAGTCACAATTTAATCACATATGTAATAACCAGTATGTGACAGTGTGAAGGAACACATAAACAACACAAAGACAAATCTCCATGGATACAGTCCATGAACACTCAAATACCCAGTAAACACAAAACATATTTTAGGCAACGAAATTGCTTATGACAGTTGTTCTGGGAAGAAGATACAATTAATCTGGATCAGGTACTGTATGTTATTATGTGGTTGTACCACGAGAGGTATGACATGTCTTTTAAAATATAGATACAACACGGGAAGAAGCCGTAATGGGAGACAACTGAAAACAAATACTGTGTTATGACAAAAATACAAGAACAAAACTAAACTAGCTCAATGACGTTCATAAAGCTGAAACATCCAAAACAATTCATTCAATAAAGTAAAAAAGAAAGTGCTACAGAAATGCAAGAACTGGGTCCAGTTCTCACCTGGCTGCCTACCTGCCCACTTCATCAAATGAAATCCTCGGCTGAGATAAGCATACTGATCTGATGAAGTTCATTGAACTTCAAACATCGCCATACAGCTATCAATCAAAGTTGGGCCCACAGACTTGAAAATATGAGATAGAACCAAACCGTTCCCTGATATAAATAACCGTAGTAAAAGGCACAACTACAACTTCTTATAAAAATACTCAAGAAACAATAAGAAATCCATGTAAACGAGCAGCATTTGGCTTTTGCAAGTAAGAGAAACTATCTAAAATtgctgttccccccccccccccccccccaaaaaaaaacaacaaacaaaagttTAGATAACGTTGGGGGGGATATGAAAACACAATATGCAGTTCactttaaatttaaaaaaagtctGCTCTACAGAACATTTTTCAGGTACATTAAACATTTCTATACAACATATAAATCCAGCAAAACACCTTATGAAAGCAccatcagaatcacctttattcacTATGTACATTTACAAATACTCAGAGTTGTACTTGGTGATATGGTGCCGGCTGCTTGTGATAGACAACATTTAGAGACCGAATACAGACAACGAagtttacacacattatatacaactAGGTAAAGTGAACATAGAGAAGGAGCAGATATACAAATGTACAGTGGGTATATTATTGATATACAGTGGATGTACACATTTACAGTatgaatctacagtgccttgcgaaagtattcggcccccttgaactttgcgaccttttgccacatttcaggcttcaaacaaagatataaaactgtagttttttgtgaagaatcaacaacaagtgggacacaatcatgaagtggaacgacatttattggatatttcaaacttttttaacaaatcaaaaactgaaaaattgggcgtgcaaaattattcagcccctttactttcagtgcagcaaactctctccagaagttcagtgaggatctctgaatgatccaatgttgacctaaatgactaatgatgataaatacaatccacctgtgtgtaatcaagtcgccatataaatgcacctgcactgtgatagtctcagaggtccgttaaaagcgcaaagagcatc
>TU475947
TCACAATTTAATCACATATGTAATAACCAGTATGTGACAGTGTGAAGGAACACATAAACAACACAAAGACAAATCTCCATGGATACAGTCCATGAACACTCAAATACCCAGTAAACACAAAACATATTTTAGGCAACGAAATTGCTTATGACAGTTGTTCTGGGAAGAAGATACAATTAATCTGGATCAGGTACTGTATGTTATTATGTGGTTGTACCACGAGAGGTATGACATGTCTTTTAAAATATAGATACAACACGGGAAGAAGCCGTAATGGGAGACAACTGAAAACAAATACTGTGTTATGACAAAAATACAAGAACAAAACTAAACTAGCTCAATGACGTTCATAAAGCTGAAACATCCAAAACAATTCATTCAATAAAGTAAAAAAGAAAGTGCTACAGAAAT
>TU475948
TCACAATTTAATCACATATGTAATAACCAGTATGTGACAGTGTGAAGGAACACATAAACAACACAAAGACAAATCTCCATGGATACAGTCCATGAACACTCAAATACCCAGTAAACACAAAACATATTTTAGGCAACGAAATTGCTTATGACAGTTGTTCTGGGAAGAAGATACAATTAATCTGGATCAGGTACTGTATGTTATTATGTGGTTGTACCACGAGAGGTATGACATGTCTTTTAAAATATAGATACAACACGGGAAGAAGCCGTAATGGGAGACAACTGAAAACAAATACTGTGTTATGACAAAAATACAAGAACAAAACTAAACTAGCTCAATGACGTTCATAAAGCTGAAACATCCAAAACAATTCATTCAATAAAGTAAAAAAGAAAGTGCTACAGAAATGCAAGAACTGGGTCCAGTTCTCACCTGGCTGCCTACCTGCCCACTTCATCAAATGAAATCCTCGGCTGAGATAAGCATACTGATCTGATGAAGTTCATTGAACTTCAAACATCGCCATACAGCTATCAATCAAAGTTGGGCCCACAGACTTGAAAATATGAGATAGAACCAAACCGTTCCCTGATATAAATAACCGTAGTAAAAGGCACAACTACAACTTCTTATAAAAATACTCAAGAAACAATAAGAAATCCATGTAAACGAGCAGCATTTGGCTTTTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU475946 False 1021 lncRNA 0.36 1 58109666 58110686
TU475944 False 645 lncRNA 0.36 1 58109761 58110405
TU475945 False 1766 lncRNA 0.37 1 58109761 58111526
TU475947 False 411 lncRNA 0.34 1 58109995 58110405
TU475948 True 692 lncRNA 0.36 1 58109995 58110686

Neighbor

gene id symbol gene type direction distance location
LOC110522977 NA coding upstream 23397 58084721 ~ 58086269 (+)
LOC110524136 LOC100136537 coding upstream 78772 58028761 ~ 58030894 (+)
LOC110524134 NA coding upstream 203006 57874805 ~ 57906660 (+)
sid1 NA coding upstream 206437 57902102 ~ 57903229 (+)
LOC118964626 LOC106595063 coding upstream 258148 57841922 ~ 57851518 (+)
LOC110524139 lsm4 coding downstream 8539 58120065 ~ 58124398 (+)
LOC110524140 LOC106613630 coding downstream 46995 58158521 ~ 58160134 (+)
LOC110524142 NA coding downstream 87861 58199387 ~ 58205370 (+)
LOC110524143 LOC106573897 coding downstream 200806 58312332 ~ 58370090 (+)
LOC118964627 NA coding downstream 289903 58401429 ~ 58404889 (+)
G419986 LOC106613627 non-coding upstream 2721 58105115 ~ 58106945 (+)
G419976 NA non-coding upstream 19191 58089993 ~ 58090475 (+)
G419979 NA non-coding upstream 19849 58089696 ~ 58089817 (+)
G419980 NA non-coding upstream 21769 58087666 ~ 58087897 (+)
G419971 NA non-coding upstream 22872 58086559 ~ 58086794 (+)
G419975 NA non-coding downstream 13143 58124669 ~ 58124739 (+)
G419995 NA non-coding downstream 30363 58141889 ~ 58142108 (+)
G419999 NA non-coding downstream 40450 58151976 ~ 58153840 (+)
G420026 NA non-coding downstream 94338 58205864 ~ 58210110 (+)
G420055 NA non-coding downstream 134464 58245990 ~ 58246538 (+)
G419452 NA other upstream 210018 57884380 ~ 57899648 (+)
LOC110524119 LOC106613607 other upstream 742329 57352343 ~ 57367627 (+)
LOC100135807 LOC106613594 other upstream 1151501 56943838 ~ 56958165 (+)
G418251 rtca other upstream 1184490 56923924 ~ 56925176 (+)
G418119 LOC106613588 other upstream 1379845 56726185 ~ 56729821 (+)
G420117 LOC100846954 other downstream 301597 58411240 ~ 58418268 (+)
G420634 NA other downstream 831202 58942728 ~ 58944217 (+)
LOC110524226 LOC106573564 other downstream 2582731 60694220 ~ 60695905 (+)
G423922 NA other downstream 3610011 61721537 ~ 61722024 (+)
G424079 NA other downstream 3993997 62105523 ~ 62105872 (+)

Expression


Co-expression Network