G420133


Basic Information

Item Value
gene id G420133
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 58434589 ~ 58434895 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU476120
CGCAAAGATATTTGTGGATATCCCACCTCGTGGAGCAGCTTCTCCAGTTTCTCCTGCAGCTCCACAAAGTAGCGTGAAGTGACCAGGCCCGTGTGGGACTTGTCCAGGCAGTCTCGGACCAGCTCCACCAGCTGGTGCTGGATGAAGCCCAGCACGCCATCGGACAGTGGGAGGGTGCTGTCTGGGGAGCAGGCGGTGATGATATCCAGCAAGCGCTCTTCCATCTGTGCTGTGGCCTAAAGGGACAGCGAACACACACAACATTATaccaaaaaaacacaattaagcATTAGTTCAGTAAGAAAAT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU476120 True 307 lncRNA 0.53 1 58434589 58434895

Neighbor

gene id symbol gene type direction distance location
LOC118964627 NA coding upstream 29700 58401429 ~ 58404889 (+)
LOC110524143 LOC106573897 coding upstream 64499 58312332 ~ 58370090 (+)
LOC110524142 NA coding upstream 229219 58199387 ~ 58205370 (+)
LOC110524140 LOC106613630 coding upstream 274455 58158521 ~ 58160134 (+)
LOC110524139 lsm4 coding upstream 310191 58120065 ~ 58124398 (+)
LOC118964530 NA coding downstream 46042 58480937 ~ 58482309 (+)
LOC110524147 LOC106613637 coding downstream 49148 58484043 ~ 58493673 (+)
LOC110524149 LOC106613638 coding downstream 65210 58500105 ~ 58505933 (+)
LOC110524150 LOC106613639 coding downstream 78034 58512929 ~ 58539436 (+)
LOC110524154 NA coding downstream 144647 58579542 ~ 58620188 (+)
G420132 NA non-coding upstream 85 58434255 ~ 58434504 (+)
G420122 NA non-coding upstream 11079 58423100 ~ 58423510 (+)
G420120 NA non-coding upstream 13229 58421026 ~ 58421360 (+)
G420119 NA non-coding upstream 13916 58420420 ~ 58420673 (+)
G420118 LOC106613636 non-coding upstream 15800 58418364 ~ 58418789 (+)
G420134 NA non-coding downstream 1068 58435963 ~ 58436185 (+)
G420136 NA non-coding downstream 5115 58440010 ~ 58440241 (+)
G420138 NA non-coding downstream 9607 58444502 ~ 58444730 (+)
G420139 NA non-coding downstream 10052 58444947 ~ 58445250 (+)
G420144 NA non-coding downstream 20260 58455155 ~ 58455370 (+)
G420117 LOC100846954 other upstream 17813 58411240 ~ 58418268 (+)
G419452 NA other upstream 534941 57884380 ~ 57899648 (+)
LOC110524119 LOC106613607 other upstream 1067252 57352343 ~ 57367627 (+)
LOC100135807 LOC106613594 other upstream 1476424 56943838 ~ 56958165 (+)
G418251 rtca other upstream 1509413 56923924 ~ 56925176 (+)
G420634 NA other downstream 507833 58942728 ~ 58944217 (+)
LOC110524226 LOC106573564 other downstream 2259362 60694220 ~ 60695905 (+)
G423922 NA other downstream 3286642 61721537 ~ 61722024 (+)
G424079 NA other downstream 3670628 62105523 ~ 62105872 (+)
LOC110524265 LOC106613745 other downstream 3848257 62283054 ~ 62327772 (+)

Expression


Co-expression Network