G420495


Basic Information

Item Value
gene id G420495
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 58557388 ~ 58558448 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU476525
ACTAATAGATTGGAACGCCACGCACAGGTCGACACTGGTTAAAGGCAGGGAGGTAACAAGAACACTAGTAACACTGCTTTACCTGTCCTTATTGGTGTCACAAGGGTCTCCGATCAAATCGTTGTCCATATCCAACTGTATCAAACACAAAAAATATCACTCGAACATCGACATAGTTTGTCATTCTGGTAGAACATGCAGTAATGACTAGGATTAATACAAGTACAGCTAAACATGGAAATCAGAAACCAGACCTGGTCAGGGTTTTGAACATAGGGGCAACTGTCACAAGCATCTCCGACTTTGTCCCCATCTCGATCCTTCTGGTTAGCATTGGGAACCCTTTTGCAGTTGTCCAGATTATTGGGGATTCCTAGAAGGAGGTAATGTCGCCATCAATGTCTTCGTCACATTCGTCACCCAGTCTATCAACATCAGTGTCTTTCTGGTCGTTGTTTTTGATCATACGGCAGTTGTCACAGGCGTCTCCAAAGTCGTCTTCGTCCACATTTCTTTGGTTGACATTTGGTACCAGCACACAGTTGTCCTACCAAAGAGGCATCAGAGCCTGTCTTTACACTAAGATACAAAATCAGTGTAAAGACCTGTCGTAAACATGACACAGCAAAAAATCAGTTGCTGGAGAAAGAGATCAGTAACCTGTGTATTTAGGATTCCATCGCCATCTGCATCCTCATCACAGGCATCTCCTTTGCCATCCTTGTCTACATCCTCTTGACCCGAGTTGGGTACTGTTAGACAGTTATCCTAAAAGTCTTGGCACAGTTCCTCTCGGTGCATTCCAGTTTCTCATCAGGGAAGCCATCAATGTCAATGTCAGAGCTGCAGAAGTAGCCATTG

Function

NR:

description
thrombospondin-4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU476525 True 861 lncRNA 0.44 3 58557388 58558448

Neighbor

gene id symbol gene type direction distance location
LOC110524150 LOC106613639 coding upstream 17952 58512929 ~ 58539436 (+)
LOC110524149 LOC106613638 coding upstream 51455 58500105 ~ 58505933 (+)
LOC110524147 LOC106613637 coding upstream 66163 58484043 ~ 58493673 (+)
LOC118964530 NA coding upstream 75079 58480937 ~ 58482309 (+)
LOC118964627 NA coding upstream 152499 58401429 ~ 58404889 (+)
LOC110524154 NA coding downstream 21094 58579542 ~ 58620188 (+)
LOC110524153 LOC106613641 coding downstream 62070 58620518 ~ 58646110 (+)
LOC110524155 LOC106613642 coding downstream 88712 58647160 ~ 58656842 (+)
LOC110524159 NA coding downstream 103462 58661910 ~ 58669975 (+)
LOC110524157 LOC106613644 coding downstream 115810 58674258 ~ 58699892 (+)
G420465 NA non-coding upstream 79983 58477182 ~ 58477405 (+)
G420159 NA non-coding upstream 82136 58474846 ~ 58475252 (+)
G420155 NA non-coding upstream 89192 58467992 ~ 58468196 (+)
G420153 NA non-coding upstream 90674 58466440 ~ 58466714 (+)
G420511 NA non-coding downstream 19656 58578104 ~ 58578620 (+)
G420545 NA non-coding downstream 121138 58679586 ~ 58679864 (+)
G420117 LOC100846954 other upstream 140612 58411240 ~ 58418268 (+)
G419452 NA other upstream 657740 57884380 ~ 57899648 (+)
LOC110524119 LOC106613607 other upstream 1190051 57352343 ~ 57367627 (+)
LOC100135807 LOC106613594 other upstream 1599223 56943838 ~ 56958165 (+)
G418251 rtca other upstream 1632212 56923924 ~ 56925176 (+)
G420634 NA other downstream 384280 58942728 ~ 58944217 (+)
LOC110524226 LOC106573564 other downstream 2135809 60694220 ~ 60695905 (+)
G423922 NA other downstream 3163089 61721537 ~ 61722024 (+)
G424079 NA other downstream 3547075 62105523 ~ 62105872 (+)
LOC110524265 LOC106613745 other downstream 3724704 62283054 ~ 62327772 (+)

Expression


Co-expression Network