G423945 (LOC106613733)


Basic Information

Item Value
gene id G423945
gene name LOC106613733
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 61763326 ~ 61765950 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU480310
TTAGAAATATACTGATTATATATTTATGCCTTAGGCAACATCTAGTGGGAAAATATGGATGATATCCATTAGATTCCGGTTAGACACTACAAATCTATATTTATAGACACCAGATAGTGAAACTGCGCAGTCAGGCTGAAATGATTACTGACTGTGAAGGAGTAGCCTTCACTGTAAAATGaatgaatgtatttatatatctaGGATCCTAGCTAAATTGTCAATCCATTATAACGTGCAAATCCAATAAACTCATCTTTATTTCATCAGCACAACCTTTAACTGTTGGTTTGAACGTTCAAATGAGTGACATGTCCCTTTATTGTCAGCTGACTGCTTGCGAGCCTTGCTAATACGCTGATTGCACACACCTGTGGCCTCCTGCCTGAAACGCTTCAGTTTGTTTAAATGGAGGATGGCATTCAGTGTGTGAGGGACTGCAGGCATGTTgttaataaaaataaactatttatgatatcaccatctctgtctcaTCAACGTGAGGGCATTATTGCACACCGACGGTCAGGTCCAATGGagaataaaacattaaaaaatgtTATACCAATGCAATTGCTCAGATAAACAAAATATAACAATacaaaaaaacattgggagggatctcaGACTATTCCTCCAttcagaatccttccagatcctcgATATCCTTCATCTGCCCTCTTCAATTTAAACCAGTCCGGAGACTGATGTTGATTTTTGTGGTCAATTAGCCATtactttgtggattttgatgtgtgcttggggttatcatcttgctggaagatccacttgtggccaagtTTCAGCATCCTAGAAGAGGCAATCAGGTTTTGGGCTAAAATGTCCTTGTACTGGGTGAAGTTCATgctgccgttgaccttaacaagggccccagaaCCAGTGGAAGCAAATTAGCCccaataacatcaaagatccaccaccatatggAACAGTAGGTGTTTTTTTCTCTTCATATGCATCATTCTGTGGAAGCCTAGGGCTTTATTGtagtgtcatctgaccatagcaaaGGTTCCAAACCAACtgccaatgccgtttagcaaTCTCCATTTGTTAGATGACATGACaattgagctctttggccacgcacaccagttaattgaccacacaaatcaacattttgcaatggccatcagTTTCTAGACTTGAACCACACTcctctgtatggaggaatggtccaatttccctcccaatgtgttctccaatctcatcaaacattatagaaaaaggctcagtgtcgttATCCTCGCAAGGAGAGGTATTGAAAACAAGTGTGGCAATAATTTTGACCTCTcttttttggagaaaaaaatattacttgataaacaaaatctctttctctgagcaactgtattagtataaaatagaaTTTTCTCATTTTTGAGCATACATTATAGCTCAGTACTTGTTATACAGtatttgctcatctttatcaagggtgccaataattttccTGACAGTACATTCCATCTTGGCACGTCATAAAATTGACATTTTTAACCGTCACAAAACAGAAACAAGCTCTTTGGAATAAGACTACATCCCCAACTACCAACTATTTTCTGGCAGCAAGGCCCACTAGGTGACTCTTCCATGAGACGTTGATGCTAAATGCAGAAGTGAGCAGAGCAGCGGATTACAGCTGCAACAAGCCCGGAAATAATCAAGAAGAAAAAGCAGCAATGCATGGTTGAAAATATAAGTGAATCTTCAGTTTAAAGCAACAGAAAACATTGTGAGCATAGTTGATAAAATTCCATACTAAAATGAACCGATTGTAAAGTTCTTCGCCTCTGATAATCTCCAGCCCCATTAAGTGCCCTTACCAGAGATAATACCACAATCTCAAACAAATATCAGGACTGGAAATGTAAAATCATTCACATTCTCATACCTCTCATATTGCAAACTCATCAAACATCTACCCTGCTTGATGACACTTATTGTAGCCTTAGTACAGACATCCCATCCATCAACAGCAAGAGTGGGGGGTCTGGCTGTGCGTGCTTAATGTGTGTCAGAGGATGTGCGCTTAAATAAATGGACAgcttctgtctcctcctgtctgtccagTATCCACTCTCCCCTTTCAATCCCTATCTGACTTAGAGGATCCATATTGTGTCTGTGACCGACGGACGACAACTCTAGTCTCAACAGTGAACCTTTCCTCTGGCTCCCTCTGCTGGCTCAGTGTGTGAAGTATCCCAACTGGTGCATCTTGTGCAGGAGGTTGTGCATGAGGTCAAAGGTGGTGAAGCTGACCCCCACAGCGATAGGCCCTTTGATCCAGTTCATACTGAggcccttgtagagtccacgcacCACACCCTCCTGCACCACGATCGCTTTCATGGTGTTCAGGACGCTGCCGTACTGTTGGCCCGTCACCCCGGCCGTCTGCATGCGTCGGCGAACCACGTCCAGCGGGTAGGAGGCCGACTGGCCGAGTAGGCCAGCACACGCGCCAAATGCCAAGCGCTCGTAGGAGTACGGCTGGGA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU480310 True 2523 lncRNA 0.43 2 61763326 61765950

Neighbor

gene id symbol gene type direction distance location
LOC110524248 LOC106613729 coding upstream 108131 61637104 ~ 61655195 (+)
nr2c2ap nr2c2ap coding upstream 163994 61590603 ~ 61599332 (+)
hapln4 hapln4 coding upstream 477660 61267215 ~ 61285666 (+)
tm6sf2 tm6s1 coding upstream 498120 61248572 ~ 61265206 (+)
LOC118964633 polr2e coding upstream 682319 61077504 ~ 61081007 (+)
LOC110524251 LOC106613732 coding downstream 20497 61786447 ~ 61793643 (+)
gatad2ab NA coding downstream 42932 61808882 ~ 61840823 (+)
yjefn3 yjefn3 coding downstream 78066 61844016 ~ 62001312 (+)
cilp2 cilp2 coding downstream 240352 62006302 ~ 62030169 (+)
si:ch211-212d10.1 LOC106614002 coding downstream 302248 62068198 ~ 62072769 (+)
G423926 NA non-coding upstream 29944 61732871 ~ 61733382 (+)
G423906 NA non-coding upstream 77700 61685412 ~ 61685626 (+)
G423901 NA non-coding upstream 83473 61679621 ~ 61679853 (+)
G423874 NA non-coding upstream 106936 61655986 ~ 61656390 (+)
G423881 NA non-coding upstream 118345 61644672 ~ 61644981 (+)
G424016 NA non-coding downstream 120603 61886553 ~ 61960274 (+)
G424017 NA non-coding downstream 121020 61886970 ~ 61929755 (+)
G424018 NA non-coding downstream 121349 61887299 ~ 61954426 (+)
G424019 NA non-coding downstream 129478 61895428 ~ 61936387 (+)
G424025 NA non-coding downstream 172603 61938553 ~ 61944229 (+)
G423922 NA other upstream 41302 61721537 ~ 61722024 (+)
LOC110524226 LOC106573564 other upstream 1067421 60694220 ~ 60695905 (+)
G420634 NA other upstream 2819109 58942728 ~ 58944217 (+)
G420117 LOC100846954 other upstream 3346550 58411240 ~ 58418268 (+)
G419452 NA other upstream 3863678 57884380 ~ 57899648 (+)
G424079 NA other downstream 339573 62105523 ~ 62105872 (+)
LOC110524265 LOC106613745 other downstream 517202 62283054 ~ 62327772 (+)
G425224 NA other downstream 1279140 63045090 ~ 63051530 (+)
nfil3-4 LOC106614010 other downstream 1910464 63676409 ~ 63684848 (+)
sac3d1 sac3d1 other downstream 2411078 64177028 ~ 64183138 (+)

Expression


Co-expression Network