G424016


Basic Information

Item Value
gene id G424016
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 61886553 ~ 61960274 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU480386
agagagaacagtctgagagagagagagagaacagtctgagagagagagagagaacagtctgagagagagagagagaacagtctgagcgagagagagagaacagtctgagagagagagaacagtctgagagagagagagagaacagtctgagagagagagagagaacagtctgagagagagagagagaacagtctgagcgagagagagagaacagtctgagagagaagtctgagcgagagagagagagaacagtctgagagagaaagagagagaacagtctgagcgagagagagagagaacagtctgagcgagagagagagaacagtctgagagagagaacagtctgagcgagagagagagagagcgagcgagagagagaacagtctgagcgagagagagagagcagtctgggcgagagagaaagagagagcagtctgagcgagagagagagaacagtctgagcgagagagagagaacagtctgagcgagagagagagaacagtctaagcgagagagagagagaac
>TU480387
agagagaacagtctgagagagagagagagaacagtctgagagagagagagagaacagtctgagagagagagagagaacagtctgagcgagagagagagaacagtctgagagagagagaacagtctgagagagagagagagaacagtctgagagagagagagagaacagtctgagagagagagagagaacagtctgagcgagagagagagaacagtctgagagagaagtctgagcgagagagagagagaacagtctgagagagaaagagagagaacagtctgagcgagagagagagagaacagtctgagcgagagagagagaacagtctgagagagagaacagtctgagcgagagagagagagagcgagcgagagagagaacagtctgagcgagagagagagagcagtctgggcgagagagaaagagagcagtctgagcgagagagagagaacagtctgagcgagagaaccgtctgagcgagagagaacagtctgagcgagagagagagagagaacagtctgagcgagagagagagagaacagtctgagcgagagagagagaacagtctgagccagagagagagagagagaacagtgagcgagagagagagagaacagtgagcgagagagagagagaacagtgagcgagagagagagaacagtgagcgagagagagagaacagtgagcgagagagagagaacagagagggagaagagagagagagagcagtctgagagagagagagagcagtctgagcgagagagagagcagtctgagcgagagagagaacagtctgagcgagagaacagtctgagcgagagcgagagaacagtctgagcgagagagagagaacagtctgagcgagagagagagagaacagtctgagtgagagagagaacagtctgagcgagagagagagaacagtctgagcgagagagagagaacagtgagcgtgagagagagagagaacagtctgagcgtgagagagagagagaacagtctgagcgagagagtctgagagagagagagaacagtctgagcgagagtcagagagagagaacagtctgagagaacagtctgagcgagagagagagaacagtctgagcgatagagagaacagtctgagcaagagagagaacagtctgagcgagagagagagagagaacagtctgagcgagagagagagagaacagtctgagcgagagagagagagaactgagcgggagagaacagtcagagagagaacagtctgagcgagagagagggagagagagagaacagtctgagcgagagagcgagagaacagtctgagcgagagagagagagaacagtctgagagagaacagtctgagcgagagagagagagaga
>TU480388
agagagaacagtctgagagagagagagagaacagtctgagagagagagagagaacagtctgagagagagagagagaacagtctgagcgagagagagagaacagtctgagagagagagaacagtctgagagagagagagagaacagtctgagagagagagagagaacagtctgagagagagagagagaacagtctgagcgagagagagagaacagtctgagagagaagtctgagcgagagagagagagaacagtctgagagagaaagagagagaacagtctgagcgagagagagagagaacagtctgagcgagagagagagaacagtctgagagagagaacagtctgagcgagagagagagagagcgagcgagagagagaacagtctgagcgagagagagagagcagtctgggcgagagagaaagagagcagtctgagcgagagagagagaacagtctgagcgagagaaccgtctgagcgagagagaacagtctgagcgagagagagagagagaacagtctgagcgagagagagagagaacagtctgagcgagagagagagaacagtctgagccagagagagagagagagaacagtgagcgagagagagagagaacagtgagcgagagagagagagaacagtgagcgagagagagagaacagtgagcgagagagagagaacagtgagcgagagagagagaacagagagggagaagagagagagagagcagtctgagagagagagagagcagtctgagcgagagagagagcagtctgagcgagagagagaacagtctgagcgagagaacagtctgagcgagagcgagagaacagtctgagcgagagagagagaacagtctgagcgagagagagagagaacagtctgagtgagagagagaacagtctgagcgagagagagagaacagtctgagcgagagagagagaacagtgagcgcgagagagagagagagaacagtctgagcgagagagagaacagtctgagcgagagagagagagaacagtctgagcgagagagggagaga
>TU480384
agagagaacagtctgagcgagagagaacagtctgagcaagagagagagagaacagtctgagcgagagagagagaacagtctgagcgagagagagagagagaacagtctgagcgagagagagagagagagaacagtctgagcgagagagagagcgagagagagagaacagtctgagcgagagagaaagagagcagtctgggcgagagagaaagagagcagtctgagcgagagaacagtgagcgagagagaacagtctgagcgagagagagagaacagtctgagcgagagagagagaacagtctgagcgagagagagagaacagtctgagcgagagagagagagaacagtctgagcgagagagagagagaacagtctgagagagagagagaacagtctgagcgagagaacagtctgagcgagagagaacagtctgagcgagagagagagaacagtctgagcgagagagagagagcagtctgggcgagagagaaagagagctgtctgagcgagagagagagagaacagtctgagcgagagagagagagaacagtctgagcgagagagagagagaacagtctgagcgagagagaacagtctgagcaagagagagagagaacagtctgagcgagagagagagaacagtctgagcgagagagagagagagagagaacagtctgagcgagagagagagcgagagagagaaagagagcagtctgggcgagagagaaagagagcagtctgagcgagagaacagtgagcgagagagaacagtctgagcgagagagagagaacagtctgagcgagagagtgagaacagtctgagcgagagagagagagaacagtctgagcgagagagagagagaacagtctgagcgagagagagagaacagtctgagcgagagagagagagaacagtctgagcgagagagagagagaacagtctgagcgagagagagagaacagtgagcgtgagagagagagagaacagtctgagcgtgagagagagagagaacagtctgagcgagagagtctgagagagagagagaacagtctgagcgagagtcagagagagagaacagtctgagagaacagtctgagcgagagagagagaacagtctgagcgatagagagaacagtctgagcaagagagagaacagtctgagcgagagagagagagagaacagtctgagcgagagagagagagaacagtctgagcgagagagagagagaactgagcgggagagaacagtctgagagagagaacagtctgagcgagagagagagagagagagagaacagtctgagcgagagagagagagaacagtctgagcgagagagagagagagagagaacagtctgagtgagagagagaacag
>TU480385
agagagaacagtctgagcgagagagaacagtctgagcaagagagagagagaacagtctgagcgagagagagagaacagtctgagcgagagagagagagagaacagtctgagcgagagagagagagagagaacagtctgagcgagagagagagcgagagagagagaacagtctgagcgagagagaaagagagcagtctgggcgagagagaaagagagcagtctgagcgagagaacagtgagcgagagagaacagtctgagcgagagagagagaacagtctgagcgagagagagagaacagtctgagcgagagagagagaacagtctgagcgagagagagagagaacagtctgagcgagagagagagagaacagtctgagagagagagagaacagtctgagcgagagaacagtctgagcgagagagaacagtctgagcgagagagagagaacagtctgagcgagagagagagagcagtctgggcgagagagaaagagagctgtctgagcgagagagagagagaacagtctgagcgagagagagagagaacagtctgagcgagagagagagagaacagtctgagcgagagagaacagtctgagcaagagagagagagaacagtctgagcgagagagagagaacagtctgagcgagagagagagagagagagaacagtctgagcgagagagagaacagtctgagcgagagcgagagaacagtctgagcgagagagagagaacagtctgagcgagagagagagagaacagtctgagtgagagagagaacagtctgagcgagagagagagaacagtctgagcgagagagagagaacagtgagcgcgagagagagagagagaacagtctgagcgagagagagaacagtctgagcgagagagagagagaacagtctgagcgagagagggagagaacagtctgagcgagagagagagaacagtctgagcgagagagagagagaacagtctgagcgagagagagagagagaac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU480386 False 525 lncRNA 0.50 5 61886553 61960274
TU480387 False 1369 lncRNA 0.52 5 61886553 61913740
TU480388 False 1041 lncRNA 0.52 4 61886553 61927236
TU480384 False 1376 lncRNA 0.52 5 61888437 61959514
TU480385 True 1003 lncRNA 0.52 3 61888437 61924137

Neighbor

gene id symbol gene type direction distance location
gatad2ab NA coding upstream 45730 61808882 ~ 61840823 (+)
LOC110524251 LOC106613732 coding upstream 92910 61786447 ~ 61793643 (+)
LOC110524248 LOC106613729 coding upstream 231358 61637104 ~ 61655195 (+)
nr2c2ap nr2c2ap coding upstream 287221 61590603 ~ 61599332 (+)
hapln4 hapln4 coding upstream 600887 61267215 ~ 61285666 (+)
cilp2 cilp2 coding downstream 46028 62006302 ~ 62030169 (+)
si:ch211-212d10.1 LOC106614002 coding downstream 107924 62068198 ~ 62072769 (+)
LOC110524265 LOC106613745 coding downstream 322780 62283054 ~ 62327772 (+)
LOC100301654 LOC106613747 coding downstream 484401 62444675 ~ 62449760 (+)
LOC110524267 LOC106613748 coding downstream 507989 62468263 ~ 62474145 (+)
G423907 NA non-coding upstream 114283 61690708 ~ 61772270 (+)
G423945 LOC106613733 non-coding upstream 120603 61763326 ~ 61765950 (+)
G423926 NA non-coding upstream 153171 61732871 ~ 61733382 (+)
G423906 NA non-coding upstream 200927 61685412 ~ 61685626 (+)
G423901 NA non-coding upstream 206700 61679621 ~ 61679853 (+)
G424031 NA non-coding downstream 23117 61983391 ~ 62021914 (+)
G424061 NA non-coding downstream 86751 62047025 ~ 62047292 (+)
G424041 NA non-coding downstream 126548 62086822 ~ 62090999 (+)
G424077 NA non-coding downstream 141922 62102196 ~ 62102397 (+)
G424080 NA non-coding downstream 147330 62107604 ~ 62107883 (+)
G423922 NA other upstream 164529 61721537 ~ 61722024 (+)
LOC110524226 LOC106573564 other upstream 1190648 60694220 ~ 60695905 (+)
G420634 NA other upstream 2942336 58942728 ~ 58944217 (+)
G420117 LOC100846954 other upstream 3469777 58411240 ~ 58418268 (+)
G419452 NA other upstream 3986905 57884380 ~ 57899648 (+)
G424079 NA other downstream 145249 62105523 ~ 62105872 (+)
G425224 NA other downstream 1084816 63045090 ~ 63051530 (+)
nfil3-4 LOC106614010 other downstream 1716140 63676409 ~ 63684848 (+)
sac3d1 sac3d1 other downstream 2216754 64177028 ~ 64183138 (+)

Expression


Co-expression Network