G424041


Basic Information

Item Value
gene id G424041
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 62086822 ~ 62090999 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU480417
CGGGGTTGTTTAATAGGCTTCATGAAGCCAGGATATACAAAAAAATCTTAGGTGTTGGTTAACAGAACAGAGAGCACATATCCTTGAAGTAACATTGAGAGTGAACGTTCAGTCCATCAGCATATTATGCACATGTTTGCAAAGAGCAAAGTACCTTAGGCCAACTGCAGAAGGCTGCAACTAACACCTAGAATACAGCCCAAAGAGCCGAAGTAGGTTCACCAGTCAAAGTAATTCACTCTTTGGATACCGAGTATTGACAAATCTTTAGCAATATCAAGGTGGTCTGCTGGAAACCAGTGCTCCCACTTAGCATTCCTACCTTGCTACACTAAAGGAATGCATTACAGAACTGAAGGAGCAACATGTCTTTAGAGCACAATCACAGCTTTTCCAGCTTCTAGTGTAAATTTCATAGATTTCATTTTTTCTTTTAAGACCAGATTTCACTACAACTCCAGTTAAAAATGAGATTAAATGGAAACATGTCGCTACTGATATTTGAGTCTTTCGATTGAGCAGGAACATCGTCAAGATTGAATTTGTCTTAGAAGCTATCAGGCTGTGTTGAACAGGTTACGATTCAACAGTAGAAACAGgtttaattgcaaacaaaggcATTTATAAAATTATCAAATTTGATTTTCTCCCAGTGCATTCTCCCTGCAACAGGAGGGCATATTGAGCTTAAGGTACTCAGACCCTTACTGAGCATCAAGGCTTACAGTAATTAAATGCTACAGGATTTCAGTTACTGCCACGAGGACAGAGATCCTGAAGAATACTTTCAACACGATAAAAAAGGACTAAAGATGCTGATTTGTTAAAGAAAACACTAGAACCAGATACCACAAACAGAAAAAAAAAAGTCTTCGAAGAGCGCATCTTTAAAAAAACAGCCAGCGATGGGACGATCTTGCAATCAGgaagtttgtttttgtttttactcGTGTGTAGCTGAGGACAAGAAGTAGGCACAAGTGTAAAGGCACTGCAGCATTCTGACATTTCTCACAGTAGACTAGAGCCCATTTATATTTTGTGCCACAGTTATCATTGCAACAGGAAAGCACCAGGACAAGGGCATTGAAAGAACCTATGCCTCTTCAAAAGAAACTGAGTGAAAAAATCTAGGAATGTCTTTCTGCTTTTGGATAGGGTGGTAGAGGGCTGGATATCCATCGTTTCAAAGAAATGTTTGATTCTTTGAGCAGACATGAGTATTTTAACATACTAATCCAAGAGGGCACAAGCTTTCGGCTTCTGAGCAACAAAGTCTTACAGGGGTCGTTCTGGGAGTCTATGCAATCATGTCCAGTTCCTCCTAAACATTTCTAGTTCGTACTAACAGTGAGATCATGGCAACAACTAGGCTACATCTTTATACTTACCATAGCTGTCATAGCTGTCTCGGTAGGATCCCCCGGAGCGGCCACCATATCCACCTTCTCCTCCACTCCTGGCCTCTCTGTAACCTCCGCTGCCACCCCCAGAGGAgtatcctcctccaccaccactcctgtagcCACCTCCATAGCTGCGGTCCCCGCCACCCCCATAGCTGCGGTCCCCGCCATAGCTGCGATCCCCGCCATAGCTGCGATCCCCACCATAGCTTCTTTCTCCCCCACCATAACCTCCACCACctcttcctctgcctcccctGAAGCCACCAGAACCGCCCCTGAAACCACCAGAACCGCCCCTGAAGCCACCCCCGCGGTCAGATCTTCCTCCTGACTTGCCAGCTTCATCCACACGAATCATCCTGCCATCGACCGACTAAACAGGAGGGCGAAAAAAAATCTATAATACCAATGATTCACGTCAGTCAAAGATATgcatgtgtctgggaaaccatcCCCTCACCTTGCCATTCATTGCAGCCATTGCGTCTTTGGCATCTTCTGGGTTTTCAAAAGTCACAAAGCCGAAACCCCTGGATCTCTGCGTCTCACGATCTCTGACAACGTCGACTTAGCAATGTTTCCATATTTTGAAAACGCCTCTTCCAGTGAAGTTTCATCGGTGTCAAAACACAATCCTCCAACAAAAAGCTTCCCCTCGTCAGACATCTTGGATTATCTAGAAGGGAAAAATTAAGAGTATGACCAAGTCCTGTAAGAAAAGGTTAGAAAA

Function

NR:

description
PREDICTED: cold-inducible RNA-binding protein-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU480417 True 2139 lncRNA 0.44 4 62086822 62090999

Neighbor

gene id symbol gene type direction distance location
si:ch211-212d10.1 LOC106614002 coding upstream 14053 62068198 ~ 62072769 (+)
cilp2 cilp2 coding upstream 56653 62006302 ~ 62030169 (+)
yjefn3 yjefn3 coding upstream 85510 61844016 ~ 62001312 (+)
gatad2ab NA coding upstream 245999 61808882 ~ 61840823 (+)
LOC110524251 LOC106613732 coding upstream 293179 61786447 ~ 61793643 (+)
LOC110524265 LOC106613745 coding downstream 192055 62283054 ~ 62327772 (+)
LOC100301654 LOC106613747 coding downstream 353676 62444675 ~ 62449760 (+)
LOC110524267 LOC106613748 coding downstream 377264 62468263 ~ 62474145 (+)
bsg bsg coding downstream 385875 62476874 ~ 62490792 (+)
LOC110524269 bsg coding downstream 388786 62479785 ~ 62485347 (+)
G424061 NA non-coding upstream 39530 62047025 ~ 62047292 (+)
G424031 NA non-coding upstream 64908 61983391 ~ 62021914 (+)
G424018 NA non-coding upstream 132396 61887299 ~ 61954426 (+)
G424025 NA non-coding upstream 142593 61938553 ~ 61944229 (+)
G424019 NA non-coding upstream 150435 61895428 ~ 61936387 (+)
G424077 NA non-coding downstream 11197 62102196 ~ 62102397 (+)
G424080 NA non-coding downstream 16605 62107604 ~ 62107883 (+)
G424081 NA non-coding downstream 17560 62108559 ~ 62108771 (+)
G424090 NA non-coding downstream 33252 62124251 ~ 62124608 (+)
G424130 NA non-coding downstream 85023 62176022 ~ 62176308 (+)
G423922 NA other upstream 364798 61721537 ~ 61722024 (+)
LOC110524226 LOC106573564 other upstream 1390917 60694220 ~ 60695905 (+)
G420634 NA other upstream 3142605 58942728 ~ 58944217 (+)
G420117 LOC100846954 other upstream 3670046 58411240 ~ 58418268 (+)
G419452 NA other upstream 4187174 57884380 ~ 57899648 (+)
G424079 NA other downstream 14524 62105523 ~ 62105872 (+)
G425224 NA other downstream 954091 63045090 ~ 63051530 (+)
nfil3-4 LOC106614010 other downstream 1585415 63676409 ~ 63684848 (+)
sac3d1 sac3d1 other downstream 2086029 64177028 ~ 64183138 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00005977 LOC106573600,LOC106613740,LOC105011525 misc CM030142.1 CM030142.1 13568467 ~ 13583351 (-)