G424171


Basic Information

Item Value
gene id G424171
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 62241967 ~ 62242394 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU480558
CGGTTTTATAGATGGGGAGATGCTCTTATATTGACATGGCAAGTCAGTAATTTTTCAATTCTTTCCACTCCCAAATCCTCAATACAATTAAAGAACAATGATTTCCAGTAGTGTCTGACTGGCTGATTAACTACCATCTTGATGAGGTGGGTATAGAGCAAGGGTCTGGAAAAAGACACATATTGACCAATTGCTTTGAGCAGTGTGCTaggcacacaggcacagacaggcacacacacacacgcaccacacacacagtttatgATGTACTTCTAACACATGAACAGAATACCTTATCTAGAAAAGAACTTGGACAATCTGACTATAAGGTGGAGGTGCATGAACGGACCATATAGTTATAGCCCTATGACAAGACAAGGCCTTATCGGAGCTCCATCACCAGCACTCAGAACACTTCTCTACTACTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU480558 True 428 lncRNA 0.42 1 62241967 62242394

Neighbor

gene id symbol gene type direction distance location
si:ch211-212d10.1 LOC106614002 coding upstream 169198 62068198 ~ 62072769 (+)
cilp2 cilp2 coding upstream 211798 62006302 ~ 62030169 (+)
yjefn3 yjefn3 coding upstream 240655 61844016 ~ 62001312 (+)
gatad2ab NA coding upstream 401144 61808882 ~ 61840823 (+)
LOC110524251 LOC106613732 coding upstream 448324 61786447 ~ 61793643 (+)
LOC110524265 LOC106613745 coding downstream 40660 62283054 ~ 62327772 (+)
LOC100301654 LOC106613747 coding downstream 202281 62444675 ~ 62449760 (+)
LOC110524267 LOC106613748 coding downstream 225869 62468263 ~ 62474145 (+)
bsg bsg coding downstream 234480 62476874 ~ 62490792 (+)
LOC110524269 bsg coding downstream 237391 62479785 ~ 62485347 (+)
G424170 NA non-coding upstream 1334 62239939 ~ 62240633 (+)
G424169 NA non-coding upstream 2545 62239222 ~ 62239422 (+)
G424130 NA non-coding upstream 65659 62176022 ~ 62176308 (+)
G424090 NA non-coding upstream 117359 62124251 ~ 62124608 (+)
G424081 NA non-coding upstream 133196 62108559 ~ 62108771 (+)
G424172 NA non-coding downstream 1008 62243402 ~ 62243604 (+)
G424173 NA non-coding downstream 1361 62243755 ~ 62243969 (+)
G424174 NA non-coding downstream 2051 62244445 ~ 62244660 (+)
G424175 NA non-coding downstream 2398 62244792 ~ 62245361 (+)
G424176 NA non-coding downstream 3095 62245489 ~ 62245689 (+)
G424079 NA other upstream 136095 62105523 ~ 62105872 (+)
G423922 NA other upstream 519943 61721537 ~ 61722024 (+)
LOC110524226 LOC106573564 other upstream 1546062 60694220 ~ 60695905 (+)
G420634 NA other upstream 3297750 58942728 ~ 58944217 (+)
G420117 LOC100846954 other upstream 3825191 58411240 ~ 58418268 (+)
G425224 NA other downstream 802696 63045090 ~ 63051530 (+)
nfil3-4 LOC106614010 other downstream 1434020 63676409 ~ 63684848 (+)
sac3d1 sac3d1 other downstream 1934634 64177028 ~ 64183138 (+)
LOC110522985 NA other downstream 2001208 64243153 ~ 64244790 (+)

Expression


Co-expression Network