G428321


Basic Information

Item Value
gene id G428321
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 65697439 ~ 65697708 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU485180
ctttatggccttcctgtgacatcgggtggtgtaggtgtcctggagggcaggtagtttgcccccggtgatgcgttgtgcagacctcactaccctctggagagccttgcggttgtgggcggagcagttgccataccaggcggtgatacagcccgacaggatgctctcgattgtgcatctgtagaagtttgtgagtgcttttggtgacaagccaaatttcttcagcctcctgaggttgaagaggcgctgctacgccttcttcacgatgctgtc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU485180 True 270 lncRNA 0.56 1 65697439 65697708

Neighbor

gene id symbol gene type direction distance location
slc35a3a LOC106613831 coding upstream 19598 65661962 ~ 65677841 (+)
notch2 LOC106613830 coding upstream 35990 65604119 ~ 65661449 (+)
sec22bb LOC106613829 coding upstream 106691 65587136 ~ 65590748 (+)
LOC110524356 LOC106613828 coding upstream 110432 65581422 ~ 65587007 (+)
npl npl coding upstream 116301 65571428 ~ 65581138 (+)
foxe3 LOC106614014 coding downstream 5859 65703567 ~ 65705429 (+)
foxd2 LOC106613833 coding downstream 15758 65713466 ~ 65715867 (+)
znf692 LOC107695246 coding downstream 356256 66053964 ~ 66058160 (+)
fcho1 LOC106613838 coding downstream 361386 66059094 ~ 66106566 (+)
acsbg2 LOC106613839 coding downstream 485955 66183663 ~ 66210856 (+)
G427860 NA non-coding upstream 40345 65656771 ~ 65657094 (+)
G427859 NA non-coding upstream 43362 65653676 ~ 65654077 (+)
G427838 NA non-coding upstream 54357 65606510 ~ 65643082 (+)
G427829 NA non-coding upstream 101417 65595774 ~ 65596022 (+)
G428365 NA non-coding downstream 39271 65736979 ~ 65737304 (+)
G428370 NA non-coding downstream 46014 65743722 ~ 65744337 (+)
G428374 NA non-coding downstream 59024 65756732 ~ 65757008 (+)
G428375 NA non-coding downstream 64978 65762686 ~ 65762936 (+)
G428379 NA non-coding downstream 72151 65769859 ~ 65770273 (+)
G427747 NA other upstream 176059 65453856 ~ 65521380 (+)
LOC110524338 LOC106584398 other upstream 668737 65024444 ~ 65028828 (+)
G427476 NA other upstream 700301 64992101 ~ 64997138 (+)
LOC110522985 NA other upstream 1452910 64243153 ~ 64244790 (+)
sac3d1 sac3d1 other upstream 1518053 64177028 ~ 64183138 (+)
G428696 NA other downstream 444371 66142079 ~ 66142605 (+)
G429156 NA other downstream 1284241 66981949 ~ 67048164 (+)
LOC110524407 LOC106613876 other downstream 1763021 67458540 ~ 67464323 (+)
G430796 LOC106613888 other downstream 2405471 68103179 ~ 68103534 (+)
LOC110524423 LOC106613476 other downstream 2515008 68212224 ~ 68214236 (+)

Expression


Co-expression Network