LOC110525158 (LOC106570936)


Basic Information

Item Value
gene id LOC110525158
gene name LOC106570936
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 2466474 ~ 2489239 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036979211.1
ATTCACTGCTCTCGTTATCACCTGCCGCCATATTGGATCAATTCCCAGCGGAAGAGGAAGACAACTGAAAATATTATGTCTCCTCCTATTCGTTGTAGGATAGTTAAAACCACGGTTAAAAACCAGACGTCCGTAGCTGTATGTATCGGGATAAACATTTGAAGTGGTTTATAATATCGGTCAGTGAGAGTACGAAGCGAAGGGTTTCGTCTTTTTGacggttttatttattttaggacTTGTTGTAAATATGACTTCCCTGACACAGCGGAGTTCGGGCCTAGTGCAGAGGCGGACCGAGGCCTCTCGTAGCTCTGCCGCCGACAAGGACCGAGGAACCGGGGATGAGGACTTCGAGACCCGCCGCcgcggaggagaggaagaggatgaagaagaggatAAGGCAGACTCCAAAGAAACTCGACTCACATTGATGGAAGAAGTGTTACTCTTGGGATTGAAGGACCGCGAGgGCTACACGTCGTTCTGGAACGACTGCATCTCGTCGGGGCTGCGTGGCTGCATGCTCATAGAGCTGGCCATCAGAGGACGACTACAGCTGGAGACCTGTGGCATGAGGAGGAAAAGCCTGCTCGCCAGGAAGGTGATCTGTAAGTCAGATGCTCCGACGGGAGACGTGCTATTGGACGAGGCTCTGAAACATGTGAAGGAGACCCAGCCCCCAGAGACGGTGCAGAGCTGGATTGAGCTGCTCAGCGGCGAGACGTGGAACCCTCTGAAGCTGCACTACCAGCTGAGGAACGTGAGGGAGCGCCTGGCTAAGAACCTGGTGGAAAAGGGCGTGCTGACCACGGAGAAACAGAACTTCCTCCTCTTCGACATGACCACTCACCCGCtcaccaacaacaacatcaaACAACGCCTCATCAAGAGGGTTCAGGAGGCCGTGTTGGAGAAATGGGTCAACGACCCGCACCGCATGGACAAACGGATGCTCGCCCTCATCTTCCTGGCCCACTCGTCTGATGTCCTGGAGAATGCCTTTTCCCCTCTGCTGGACGACCAGTATGACCTGGCCATGAAGAGAGTACGGCAGCTCCTGGACCTGGAGCCAGAGGGGGAGAGCACGAAGACCAACGCCAATGAGTTGTTGTGGGCCGTAGTGGCCGCCTTTACCAAGTGACCTGACCTACCACCTTCAGACACCAGAGGGTGCTGTTGGTTTGGCGTTGGTTGATGACTGTGGGGTTGAGGGAGAGGACGGGACAGTTTGGGGAGGGACAACAGGGAGAGGGCTGGTCTGTCTGGCCCATCAAGGTAGTGACTTGACTGACTTGAGGTcacctccctctgtctttctgaaGAGACTGGCCTGCTCCAGACCTGTCCCACAGCTTTCTGAACAGAATGGTCTGTTCCAAACCTGTCCCGCAGCTTTCTGAACAGAATGGTCTGCACCAAACCTGTCCCACAGCTTTCTGAACAGAATGGTCTGTTCCAAACCTGTCCCACAGCTTTCTGAACAGAATGGTCTGTTCCAAACCTGTCCCACAGCTTTCTGAACAGAATGGTCTGCTCCAAACCTGTCCCACAGCTTTCTGGTCTGTTCCAAACCTGTCCCACAGCTTTCTGAACAGAATGGTCTGCACCAAACCTGTCCCACAGCTTTCTGAACAGAATGGTCTGCACCAAACCTGTCCCACAGCTTTCTGAACAGAATGGTCTGCACCAAACCTGTCCCACAGCTTTCTGAACAGAATGGTCTGCACCAAACCTGTCCCACAGCTTTCTGAACAGAATGGTCTGTTCCAAACCTGTCCCACAGCTTTCTGAACAGAATGGTCTGCACCAAACCTGTCCCACAGCTTTCTGAACAGAATGGTCTGCACCAAACCTGTCCCACAGCTTTCTGAACAGAATGGTCTGCACCAAACCTGTCCCACAGCTTTCTGAACAGaaaatatctctctccctctgtccttctcctttTCCCTTCATCAAGCTCTTTCTCTCTGCAAAGATGTCATTTAATCACTCACTTTTACCATAAATAAAAACTCCCCCTGATGGAGTGACCAAGCAATGTTTTGAATACTGGACTGAAATATGAAGATACaatcatcatcctcttcctccctggACAAATCTTTCAGAAATGTCTTCAAAGTATGTATGTTATTCTCTACAGGTATCTAGCTAGCTCTTATTCACTATAACCGacagtgagctccaacagtattgggacattgacccatttgttgttgttttttgactctgtactccagcactttggatttcaaaatgatacaatgactatgaggtttaAAGTGCAGAccgtcagctttaatttgagggtattttcatccatatcaggtgaaccgtGTAGAAAGTACAGAGCTTCTTGTACATTGTCCCCCCaatgactactttaatacacatagaagtgaatttgtcccaatacttttggtcccctaaaatgagtgggaggactatgtacaaaaaaa

Function

NR:

description
Golgi phosphoprotein 3-like

GO: NA

KEGG:

id description
K15620 GOLPH3, GPP34; golgi phosphoprotein 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036979211.1 True 2465 mRNA 0.50 4 2466474 2489239

Neighbor

gene id symbol gene type direction distance location
mtmr12 mtmr12 coding upstream 20004 2410231 ~ 2446470 (+)
zfr zfr coding upstream 57213 2342330 ~ 2451362 (+)
LOC110525063 LOC106570939 coding upstream 266580 2149240 ~ 2199894 (+)
LOC110525062 LOC106570947 coding upstream 361333 2002088 ~ 2105141 (+)
slc4a4a LOC101484802 coding upstream 1347885 775664 ~ 1118589 (+)
pdzd2 pdzd2 coding downstream 63972 2553211 ~ 2714300 (+)
LOC110516346 NA coding downstream 234526 2723765 ~ 2724931 (+)
LOC110525071 LOC106585963 coding downstream 254725 2743964 ~ 2866482 (+)
isl1 isl1 coding downstream 595442 3084681 ~ 3092690 (+)
fst fst coding downstream 974430 3463669 ~ 3491741 (+)
G465362 NA non-coding upstream 41969 2420838 ~ 2424505 (+)
G465354 NA non-coding upstream 63428 2401504 ~ 2403046 (+)
G465318 NA non-coding upstream 143793 2322438 ~ 2322681 (+)
G465316 NA non-coding upstream 148745 2317355 ~ 2317729 (+)
G465394 NA non-coding downstream 29571 2518810 ~ 2520811 (+)
G465451 NA non-coding downstream 158022 2647261 ~ 2649273 (+)
G465454 NA non-coding downstream 167502 2656741 ~ 2657202 (+)
G465458 NA non-coding downstream 179504 2668743 ~ 2669734 (+)
G465461 NA non-coding downstream 187598 2676837 ~ 2677087 (+)
G465355 NA other upstream 60384 2405119 ~ 2406090 (+)
G465203 NA other upstream 402407 2062328 ~ 2064067 (+)
G464705 NA other upstream 1237375 1228705 ~ 1229099 (+)
LOC110525138 rufy3 other upstream 2007468 442716 ~ 549899 (+)
G465578 NA other downstream 489603 2978842 ~ 2982425 (+)
G466813 NA other downstream 1283625 3772864 ~ 3773340 (+)
G468732 NA other downstream 3619140 6108379 ~ 6156681 (+)
G468643 LOC106607869 other downstream 3705533 6194772 ~ 6199155 (+)

Expression


Co-expression Network