LOC110526028 (ccdc60)


Basic Information

Item Value
gene id LOC110526028
gene name ccdc60
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 45187119 ~ 45236944 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021606612.2
AGAAAGCTATCCATATTCCCAGGAATCCCATACAAGCATGTGCATTGGTATTGTGTTTTCGAGATAGTTGGGCCTGCCATGACATATAGACTACCACCTTTCACTTTCTGTGTGGGCTGAGTTTCTCTGTAACCACGGGAGACAGGGTCCTACAACATAAATGCGTGTGGTTCAATGTAGACGCCGGTGCCAAAGTCTAACAGCCCGTTCTGcggtttcttatttttatttaaaaaaataatcgtggcaatttcaataaaaaaaacattgagtGCTACGATATATTTTAAAAACGTGGCCTACACAACGTTTTGTCTAGAGCTGGGGCTGTTATTACAATGACGACTCATCGAAATGCAGCACTAGACCCGCGTCACTTCGTAATAATCAAACCGCTTCCGATTCTTAAACCGTCAGGAGAAATGCGCCAGGCCCGGAGCAGAACGGTGTGGTCCGCCTGTCAGCCGACCAGGGAGCAGGTGTTCTGGGATAACTATCACCGACGACAGTGGCAGCTGAGCCGGCAGGGCTATAGAGCAGCCCCCTGGAGACCCTATGAGGAGGTCGGACAACCGCTGTACCTTGAAACCAAGAGACTCATACTAGAATCACTGGGACAACCTGTGGAAGAGGCTTCAAAGGCTGATCCCTTACCAGAAGAGGATGTGCCTGTTTGCACCACTCCATCAGATTCCCCAGGAGcaaacaagAGCTTGCCATTTCGTTGCCCCCaggcagggaagagagaggatgCAGTATCTCTTAGGAAGCATCTGGGACATACCAGCCGTTTGGTGTCAGCGGTCAGACAGGGCCGGGGTTACTTCCACCTCCTccagaagaaggagaaggaacaggaggaggcgcagcagagggagcagaagaggaaagaagagtggcagcgTGTCCAGCCCCGACCTCCCTGCTCAGAGTCTGACTCTGACAGCGACCCAGGGAGGAAGAAGGCCCAGTCAGCTCGACCTTTCACCCCCATCCACTGCTCCCTGACTTCCCCTCAGGCCTCTGAGCCACCACAAGGGCCCATATTCCGCCAGCTGTGCTGTCTGAACTGGTTGCTGGAGGCCCTGACTCTGGACAGGACCGGGAGAGCTGGACCAGTCACGTCCTGCTGGGATCTCAAGGACCCTGGCCAAGGAAAAACCACCCTAAAGACCCTGAATAAAGAGAGAGCCATAGAGACCAAATGGGACCAGTTTGTGTCTCTGCAAAAGCCACGTAGAACAGGCTCCAGGCCCTCCCGCTCCTCCTCTGGTCGTCTGTACCTGTTGAAGGGGTCCTCCCTGAGCGTAGCCTCCTCCTCAGCCCTCACCACCCCTACCCTTCTGGGCAGCCTGTCCTCCCTGGGCCCTGGGATAGAAGACACTGGAGCTACATTAACTGGAGCTATAGTGACTGCCACTGGAGCCAGCCAGGATAGTGCGGAGCAACCAGGAGCAGGAGGGGACTCCGAGACAGAGCTGCCCATGTCAGAGTACCTTCAGAAGCTGCTGGATGAAGTCCACCAGAGTGTCACCAAAGACTTCGGTGATCCAGAGCAGATTCATGGCGACGGCACTTTGACTGTCGGATACCGGCCACCTACCCAACCCACCCCTCAGAGAGAGGACAACACAACACGCCCCAAGACCAAAGACACACCAAGACCCAAAAGttGTCCTGCCAAGCCTCTGTCAGCCACCAGTGAGTTGATCAGCAGTAAGAGGTCCATGCTGTGGGATATGAGGACAGCCtatgaggagagagcagaggagctgGCCCAGATCTTCAGTGACAGTCTGGACCACAATGCCAGGCTGTCCTCTCTACTGAGCAATCTCCCTCCAGAGGTGTCTCAGGACAGAGGGGTGAGCCGAGTTCTGGAGAAACTCAGCCGCTTCGCAGATGAGCGGACCCCCAAGGTGCGACCCCATGTCTTCCTGAAGATGTTGGGGGGTCTACAGCCCTGGGAGCTCTGCCTACCTGACCTCTGTGTTGCCATTGAGCCAGGGAGCATGTTGTCCAGATGTCCAGAGAGGACTATGACTCGTGGCTCCTCTCCAGGGTCACTCTTCcacagcagcaggaccactaacCCAAAAATGTGACGACCAAAAAATACACGCGCACGCAAATATGCTCACACATTTAaatacacacccacagacaccacacacaccacccgtTCTGCCATTCAccttctgttaaaggtccccaaagcacacacatccctgggtcgctcctcttttcagttcgctgcagctagcgactggaacgagctgcaaaaatcACTCTAACTGGACTGTTTTATTTCTTAATTCGAAGACTCAATGATGGACACTCGTATTGAcggttgtggctgcttcgcgtgaattattgttgtctctaccgtcttgccctttgtgctgttgtctatgCCCAatcatgtttgtaccatgttttgtgctgctaccatgttgtgctgctcccATGTTGTTT
>XM_021606609.2
ACGGGAGACAGGGTCCTACAACATAAATGCGTGTGGTTCAATGTAGACGCCGGTGCCAAAGTCTAACAGCCCGTTCTGcggtttcttatttttatttaaaaaaataatcgtggcaatttcaataaaaaaaacattgagtGCTACGATATATTTTAAAAACGTGGCCTACACAACGTTTTGTCTAGAGCTGGGGCTGTTATTACAATGACGACTCATCGAAATGCAGCACTAGACCCGCGTCACTTCGTAATAATCAAACCGCTTCCGATTCTTAAACCGTCAGGAGAAATGCGCCAGGCCCGGAGCAGAACGGTGTGGTCCGCCTGTCAGCCGACCAGGGAGCAGGTGTTCTGGGATAACTATCACCGACGACAGTGGCAGCTGAGCCGGCAGGGCTATAGAGCAGCCCCCTGGAGACCCTATGAGGAGGTCGGACAACCGCTGTACCTTGAAACCAAGAGACTCATACTAGAATCACTGGGACAACCTGTGGAAGAGGCTTCAAAGGCTGATCCCTTACCAGAAGAGGATGTGCCTGTTTGCACCACTCCATCAGATTCCCCAGGAGcaaacaagAGCTTGCCATTTCGTTGCCCCCaggcagggaagagagaggatgCAGTATCTCTTAGGAAGCATCTGGGACATACCAGCCGTTTGGTGTCAGCGGTCAGACAGGGCCGGGGTTACTTCCACCTCCTccagaagaaggagaaggaacaggaggaggcgcagcagagggagcagaagaggaaagaagagtggcagcgTGTCCAGCCCCGACCTCCCTGCTCAGAGTCTGACTCTGACAGCGACCCAGGGAGGAAGAAGGCCCAGTCAGCTCGACCTTTCACCCCCATCCACTGCTCCCTGACTTCCCCTCAGGCCTCTGAGCCACCACAAGGGCCCATATTCCGCCAGCTGTGCTGTCTGAACTGGTTGCTGGAGGCCCTGACTCTGGACAGGACCGGGAGAGCTGGACCAGTCACGTCCTGCTGGGATCTCAAGGACCCTGGCCAAGGAAAAACCACCCTAAAGACCCTGAATAAAGAGAGAGCCATAGAGACCAAATGGGACCAGTTTGTGTCTCTGCAAAAGCCACGTAGAACAGGCTCCAGGCCCTCCCGCTCCTCCTCTGGTCGTCTGTACCTGTTGAAGGGGTCCTCCCTGAGCGTAGCCTCCTCCTCAGCCCTCACCACCCCTACCCTTCTGGGCAGCCTGTCCTCCCTGGGCCCTGGGATAGAAGACACTGGAGCTACATTAACTGGAGCTATAGTGACTGCCACTGGAGCCAGCCAGGATAGTGCGGAGCAACCAGGAGCAGGAGGGGACTCCGAGACAGAGCTGCCCATGTCAGAGTACCTTCAGAAGCTGCTGGATGAAGTCCACCAGAGTGTCACCAAAGACTTCGGTGATCCAGAGCAGATTCATGGCGACGGCACTTTGACTGTCGGATACCGGCCACCTACCCAACCCACCCCTCAGAGAGAGGACAACACAACACGCCCCAAGACCAAAGACACACCAAGACCCAAAAGttGTCCTGCCAAGCCTCTGTCAGCCACCAGTGAGTTGATCAGCAGTAAGAGGTCCATGCTGTGGGATATGAGGACAGCCtatgaggagagagcagaggagctgGCCCAGATCTTCAGTGACAGTCTGGACCACAATGCCAGGAAGAGGCTTGAGAGTGGCATCCAGAGGTTCCAAGCCCTGTGTCATGTGACCCACTCTCACCTCATCCCTCGTCATGTGACCCCACGGGTCACCGGCATGAAACCCCCAGAGACAGactgcagcaacaacaacatgtgGCTGTCCTCTCTACTGAGCAATCTCCCTCCAGAGGTGTCTCAGGACAGAGGGGTGAGCCGAGTTCTGGAGAAACTCAGCCGCTTCGCAGATGAGCGGACCCCCAAGGTGCGACCCCATGTCTTCCTGAAGATGTTGGGGGGTCTACAGCCCTGGGAGCTCTGCCTACCTGACCTCTGTGTTGCCATTGAGCCAGGGAGCATGTTGTCCAGATGTCCAGAGAGGACTATGACTCGTGGCTCCTCTCCAGGGTCACTCTTCcacagcagcaggaccactaacCCAAAAATGTGACGACCAAAAAATACACGCGCACGCAAATATGCTCACACATTTAaatacacacccacagacaccacacacaccacccgtTCTGCCATTCAccttctgttaaaggtccccaaagcacacacatccctgggtcgctcctcttttcagttcgctgcagctagcgactggaacgagctgcaaaaatcACTCTAACTGGACTGTTTTATTTCTTAATTCGAAGACTCAATGATGGACACTCGTATTGAcggttgtggctgcttcgcgtgaattattgttgtctctaccgtcttgccctttgtgctgttgtctatgCCCAatcatgtttgtaccatgttttgtgctgctaccatgttgtgctgctcccATGTTGTTT
>XM_021606610.2
GAGACAGGGTCCTACAACATAAATGCGTGTGGTTCAATGTAGACGCCGGTGCCAAAGTCTAACAGCCCGTTCTGcggtttcttatttttatttaaaaaaataatcgtggcaatttcaataaaaaaaacattgagtGCTACGATATATTTTAAAAACGTGGCCTACACAACGTTTTGTCTAGAGCTGGGGCTGTTATTACAATGACGACTCATCGAAATGCAGCACTAGACCCGCGTCACTTCGTAATAATCAAACCGCTTCCGATTCTTAAACCGTCAGGAGAAATGCGCCAGGCCCGGAGCAGAACGGTGTGGTCCGCCTGTCAGCCGACCAGGGAGCAGGTGTTCTGGGATAACTATCACCGACGACAGTGGCAGCTGAGCCGGCAGGGCTATAGAGCAGCCCCCTGGAGACCCTATGAGGAGGTCGGACAACCGCTGTACCTTGAAACCAAGAGACTCATACTAGAATCACTGGGACAACCTGTGGAAGAGGCTTCAAAGGCTGATCCCTTACCAGAAGAGGATGTGCCTGTTTGCACCACTCCATCAGATTCCCCAGGAGcaaacaagAGCTTGCCATTTCGTTGCCCCCaggcagggaagagagaggatgCAGTATCTCTTAGGAAGCATCTGGGACATACCAGCCGTTTGGTGTCAGCGGTCAGACAGGGCCGGGGTTACTTCCACCTCCTccagaagaaggagaaggaacaggaggaggcgcagcagagggagcagaagaggaaagaagagtggcagcgTGTCCAGCCCCGACCTCCCTGCTCAGAGTCTGACTCTGACAGCGACCCAGGGAGGAAGAAGGCCCAGTCAGCTCGACCTTTCACCCCCATCCACTGCTCCCTGACTTCCCCTCAGGCCTCTGAGCCACCACAAGGGCCCATATTCCGCCAGCTGTGCTGTCTGAACTGGTTGCTGGAGGCCCTGACTCTGGACAGGACCGGGAGAGCTGGACCAGTCACGTCCTGCTGGGATCTCAAGGACCCTGGCCAAGGAAAAACCACCCTAAAGACCCTGAATAAAGAGAGAGCCATAGAGACCAAATGGGACCAGTTTGTGTCTCTGCAAAAGCCACGTAGAACAGGCTCCAGGCCCTCCCGCTCCTCCTCTGGTCGTCTGTACCTGTTGAAGGGGTCCTCCCTGAGCGTAGCCTCCTCCTCAGCCCTCACCACCCCTACCCTTCTGGGCAGCCTGTCCTCCCTGGGCCCTGGGATAGAAGACACTGGAGCTACATTAACTGGAGCTATAGTGACTGCCACTGGAGCCAGCCAGGATAGTGCGGAGCAACCAGGAGCAGGAGGGGACTCCGAGACAGAGCTGCCCATGTCAGAGTACCTTCAGAAGCTGCTGGATGAAGTCCACCAGAGTGTCACCAAAGACTTCGGTGATCCAGAGCAGATTCATGGCGACGGCACTTTGACTGTCGGATACCGGCCACCTACCCAACCCACCCCTCAGAGAGAGGACAACACAACACGCCCCAAGACCAAAGACACACCAAGACCCAAAAGttGTCCTGCCAAGCCTCTGTCAGCCACCAGTGAGTTGATCAGCAGTAAGAGGTCCATGCTGTGGGATATGAGGACAGCCtatgaggagagagcagaggagctgGCCCAGATCTTCAGTGACAGTCTGGACCACAATGCCAGGAAGAGGCTTGAGAGTGGCATCCAGAGGTTCCAAGCCCTGTGTCATGTGACCCACTCTCACCTCATCCCTCGTCATGTGACCCCACGGGTCACCGGCATGAAACCCCCAGAGACAGactgcagcaacaacaacatgtgGCTGTCCTCTCTACTGAGCAATCTCCCTCCAGAGGTGTCTCAGGACAGAGGGGTGAGCCGAGTTCTGGAGAAACTCAGCCGCTTCGCAGATGAGCGGACCCCCAAGGTGCGACCCCATGTCTTCCTGAAGATGTTGGGGGGTCTACAGCCCTGGGAGCTCTGCCTACCTGACCTCTGTGTTGCCATTGAGataGCCAGGGAGCATGTTGTCCAGATGTCCAGAGAGGACTATGACTCGTGGCTCCTCTCCAGGGTCACTCTTCcacagcagcaggaccactaacCCAAAAATGTGACGACCAAAAAATACACGCGCACGCAAATATGCTCACACATTTAaatacacacccacagacaccacacacaccacccgtTCTGCCATTCAccttctgttaaaggtccccaaagcacacacatccctgggtcgctcctcttttcagttcgctgcagctagcgactggaacgagctgcaaaaatcACTCTAACTGGACTGTTTTATTTCTTAATTCGAAGACTCAATGATGGACACTCGTATTGAcggttgtggctgcttcgcgtgaattattgttgtctctaccgtcttgccctttgtgctgttgtctatgCCCAatcatgtttgtaccatgttttgtgctgctaccatgttgtgctgctcccATGTTGTTT
>TU581209
gtctgtggcagtAGAGGACATTAGGAGAGCTGAGAGCTGTTGCAGCTGAAGTCTTGTGCTCCTCTCATCtcctgctctcacacacacacacacacgcgcacacgcacacgcgcacacacacacacatacacacacacacacacacgcacacacacacacacacacacacacacacacactgatagacaggctggagagagggaagggcacaggggagagagaaaaagagatggagagaggaaagggagatacGTGACTGTTTCCTCTGCAAATCCTCATACTCTATGTCCTCAGCCAAggagagatgtgtgtgtctgcttgcctgcatgcctgtctgtctgggtaTGTACGTGAGTCTCTGTGTGCCTGTGCATATGCAAGGCTCTAGGTGCGCTTTTATGAAAATCTATGCGTGGAAATCCCCTCTGACACCTCCTTCTCACCTCATCCCCCAGCCACGTAGAACAGGCTCCAGGCCCTCCCGCTCCTCCTCTGGTCGTCTGTACCTGTTGAAGGGGTCCTCCCTGAGCGTAGCCTCCTCCTCAGCCCTCACCACCCCTACCCTTCTGGGCAGCCTGTCCTCCCTGGGCCCTGGGATAGAAGACACTGGAGCTACATTAACTGGAGCTATAGTGACTGCCACTGGAGCCAGCCAGGATAGTGCGGAGCAACCAGGAGCAGGAGGGGACTCCGAGACAGAGCTGCCCATGTCAGAGTACCTTCAGAAGCTGCTGGATGAAGTCCACCAGAGTGTCACCAAAGACTTCGGTGATCCAGAGCAGATTCATGGCGACGGCACTTTGACTGTCGGATACCGG
>TU581211
ctgtgtatagttGTCCTGCCAAGCCTCTGTCAGCCACCAGTGAGTTGATCAGCAGTAAGAGGTCCATGCTGTGGGATATGAGGACAGCCtatgaggagagagcagaggagctgGCCCAGATCTTCAGTGACAGTCTGGACCACAATGCCAGAGGCTTGAGAGTGGCATCCAGAGGTTCCAAGCCCTGTGTCATGTGACCCACTCTCACCTCATCCCTCGTCATGTGACCCCACGGGTCACCGGCATGAAACCCCCAGAGACAGactgcagcaacaacaacatgtgg
>TU581210
TCAGGACAGAGGGGTGAGCCGAGTTCTGGAGAAACTCAGCCGCTTCGCAGATGAGCGGACCCCCAAGGTGCGACCCCATGTCTTCCTGAAGATGTTGGGGGGTCTACAGCCCTGGGAGCTCTGCCTACCTGACCTCTGTGTTGCCATTGAGGTACGGACACATCAAATAATAATGGATTTATAGTGAATTCATTATTATGCTTTATTTGTTTAAGGAAGTTTAATGAAGTGCATTGTTTCTTGGTTGGTCAATTGGTTTAAACATGGTGCTAGTTGTGGGTTTGATTTCTGCTAGGGCCACGTACAAtgtataacattttaaaaaggggAAATAATTGTGTGTGTACAAAAGATTATTTGAAGACATGTTTCCTGACTGCAATGCCTCTGCCTCCGATAGGGAATATCTTAATGGCATCATCCTCTCATCcactctcttcatctccttctcaaaacccattggaggaagAGGTCCGATGGGAggaacctctggctttctcatcaaATGGGTTTTTAAAAatgagacgaggagagaggaagCAATGAgtttcagtggtggaaaaagtacacaattgtca

Function

symbol description
ccdc60 Orthologous to human CCDC60 (coiled-coil domain containing 60).

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021606612.2 False 2475 mRNA 0.53 12 45187119 45236944
XM_021606609.2 False 2479 mRNA 0.54 13 45187253 45236944
XM_021606610.2 False 2479 mRNA 0.54 13 45187257 45236944
TU581209 False 818 TUCP 0.55 2 45217727 45220782
TU581211 False 286 lncRNA 0.55 2 45223826 45228334
TU581210 True 578 lncRNA 0.44 1 45233352 45233929

Neighbor

gene id symbol gene type direction distance location
LOC110526027 hspb8 coding upstream 8294 45155981 ~ 45178825 (+)
LOC110526025 srrm4 coding upstream 34134 45061658 ~ 45152985 (+)
LOC110526024 suds3 coding upstream 291137 44873385 ~ 44895982 (+)
LOC110526020 NA coding upstream 446547 44730067 ~ 44740687 (+)
LOC110526013 LOC106585235 coding upstream 838332 44345482 ~ 44348787 (+)
si:dkey-174n20.1 LOC106584900 coding downstream 410790 45647734 ~ 45654067 (+)
LOC110526036 LOC106584896 coding downstream 576454 45813398 ~ 45837739 (+)
LOC110526902 NA coding downstream 635875 45872819 ~ 45873709 (+)
LOC118964875 NA coding downstream 662975 45899919 ~ 45901120 (+)
LOC110525032 NA coding downstream 721486 45958430 ~ 45959299 (+)
G512188 NA non-coding upstream 129084 45057711 ~ 45058035 (+)
G511781 NA non-coding upstream 141199 45020247 ~ 45045920 (+)
G511647 NA non-coding upstream 437071 44749641 ~ 44750048 (+)
G511577 NA non-coding upstream 531551 44655225 ~ 44655568 (+)
G512263 NA non-coding downstream 259 45237203 ~ 45237802 (+)
G512306 NA non-coding downstream 6486 45243430 ~ 45243648 (+)
G512308 NA non-coding downstream 10421 45247365 ~ 45248229 (+)
G512310 NA non-coding downstream 13048 45249992 ~ 45250211 (+)
G512311 xbp1 non-coding downstream 14945 45251889 ~ 45254762 (+)
G512192 LOC106584908 other upstream 1250 45184439 ~ 45185869 (+)
G510416 NA other upstream 1528626 43657468 ~ 43658493 (+)
G509160 NA other upstream 2616950 42567105 ~ 42570169 (+)
G508559 dph7 other upstream 3055179 42129225 ~ 42131940 (+)
G507768 LOC105030512 other upstream 3715711 41469551 ~ 41471408 (+)
G512912 NA other downstream 398645 45635589 ~ 45636250 (+)
LOC110526042 LOC106584891 other downstream 950056 46076084 ~ 46190292 (+)
G513501 NA other downstream 1123012 46359956 ~ 46360585 (+)
G513745 NA other downstream 1663617 46900561 ~ 46901123 (+)
G514464 NA other downstream 1689898 46926842 ~ 46927714 (+)
G512284 NA non-coding upstream 10751 45212782 ~ 45213075 (+)
G512277 NA non-coding upstream 16106 45207259 ~ 45207720 (+)
G512299 NA non-coding downstream 1670 45235599 ~ 45235951 (+)
LOC110526028 ccdc60 other upstream 3044 45187119 ~ 45236944 (+)
G512295 NA non-coding downstream 9128 45229910 ~ 45230320 (+)
G512297 NA non-coding downstream 12272 45233054 ~ 45233283 (+)

Expression


Co-expression Network