LOC110526904


Basic Information

Item Value
gene id LOC110526904
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 45968464 ~ 45972013 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005052124.1
ggtttgTCATTTTAGGCTAAAACAAATTAAGGGGCTAATCCTTATTAACTAACTAACAACGTTACTTGCCACTCGTAGCTGCCAAATAGATGTCCGAAAACAAAATGGTTAGTCCGTATGCCTTTGGAAATGTGAAATTtgacacaacatatctacaggaAAGTAACAATTTTTCAAAATGCGTGTCAGGAGATGCAGGTTCAGTCTGGCACATGCCTACATGATTTAATAACATATTGTTTTCATTCTCATCTTCAGCACCTGGGTAACTCTCGCTGTCTCAGAACCCAGTCCGCACCAAATGACACATCTAAGACTGTGGTTGTCCCGTTGACTGCCCTATGTTCATCAGAGTGGCTTGATACCAGACATGGAAGAGAACAGCGGAGTCCTACATCTCACATCACCCATACATGCAGAGGGAAACGCTGTTCAGATAAGTGAGATCAGTGGAGGCAGCCTATGAGAAGCTGGCAGATGAGGCTCTGTATGCGTTGGCTGACTACTTTGAGGATCTGATGGATGGACCACTAGCAGGGCCTGAGTTTGATGTTCTCTTCTCTggtcgttacagctgtaattcagacaaaGACATGTTCCCATCATCACAAGTATATAAACTCCACGGTagacacccctccttctctccaatacTTACATCCTATGATTCGACAGGAAGAGGGTAACAGGATAATAAACCATTATTTCTCCATTCAGGGagaaacctgaacctgaaccagatctgacctgacctcctgacctcaacccctccttcgcATAATCCACAGATGTCCTCTCGTATCACCTATCACACTCCCATGACTCCCTCTCgtccacccagcacattccgCAGCCACTCTGTCTTACTACAGAGAACCATTAACTTCTCACTCCTTTATATACAATGCGTCTGATTTATCAtgtctttaatatctcaatgttcaaagtttaccCCGAATCCAACACATGAAACGCTGTCTTCTCTGTAAGTAGGCTACTGATTGTATTCTGATTGTAAGTCAATCTGGATAAGTGTCTATTAAATTATGGAAATGGCCAGAGTATGAAAGTACAGGGACTTCTCTATAAGTACAGGGAGATACTGTACATACCAATTGCACTCCTTTTGGGAAATTCTTATCTTTATCTATCCTTCTTTTGTCCACTAGGGGTAGCTGTTTAATTACATATAATTCTGTTGGAAGTTTGTCAGTCCTTATTTGCATCAAAACACTTTCTTTATGTTAGTTTCCCAGAgcacaaatgtaaaaaatattctTGCCATTTTTTTATATTGGTGAGAAGTAACGATGTTGCAAATATAGTACTCTTTTCTGTTATTTTTTCATCCTTTCTTGTCACCCTTCATCAGAGCAGTTCTTCATCAGAGCAGACTACTTGTGAATGTTGATTGGTAGCCTATGTGCCTATTAGGGATCCGTGAGTCATTAGAGCTGTAGGATTGTGCTGTTGCTGTAATGTGCAGGGCCAATTACTTCCAGAGTGCAAAGGTCACAGGAGGAAATAATGATTGTAGTGTCTTCTAATCACTGACGCACAGGGCACTAAACACCACTTCAATACACTgatggcactgtgtgtgtgtgtccatgagaTTAAATTGGTCTAACATGACGCTAAAAAGTGTTTCATGGTAATAATGACCTGACCTCTTGACCTGGGTCAGTGCTGTATTGAACAGCCAGAGGATCTATTGATGCCCAGAGAGCTGACTGACTAACCCACCCACTACTGCTTGTGctgatgatggtgtgtgtgtgggaatgtACCCCTGTGAGATATTTTTTTGTGGAACAACTGTCAGAAGGTCACTTCTGGTGACTTTTTAAAAGGACATTCTACTCCaaaattaatttaaaaataaTTATGTTGACACCATCTGAAATATAATTTTCATTTTAAAAGTATTAGAACCTGTAGcccaactgatgcagcatagCGGCTTTAAATTAATAGGCTGAAGCATCGGGTTGCCCATCTGCATTAACCTCATTGGAAAACTCCAAATGACTATGAATGGATCGAATTCTACAAATAGACATAATTTGACACTCCAGAGGGGTATAATACAAAGCAGGTCAACAAGTTAGTCAGGTAACTTTgataaacaaccagaaataaTTATTGATTTTCTGGTTCATTAAAAAAGCTGAACTTAGATATGCGTCTTTGGTTATTGAGTCAATTAGACCCTGCCTATTTCATGTTGGCTGGTAAGTCATTGAtcttgctttgtagtatacccctctgtttttttctggatcaaatgggGCTTGGTGGTGGGCGTGGTCTCCGACAGAATATTGCTGTTTGTTTTAAAGCCACTTTTTCTAGTAGgtctgaccccatttagtcaGTTGAGATTGTTTTAATCAAGCTGTGACAAATACACTATATAAAAAATTGTTATGCCACACGTCTGTCTGGACTAAGCCATTGCGGAGGCCACAGGGATGGCACACCAGTGTCACATTTATCCtaccatttttatttaaccaggtaagttgactgagaacaccttCTCATTTACAgaaacaacctggggaatagttacaggagagagggaatgaatgagccaattgtaagctggggatgattaggtgccCATGATGGCATGAAGGCCAgaatgggaatttagccaggacacaaggattaacacccctactcttacaataagtgccatgggatctttagtgacc

Function

NR:

description
frataxin, mitochondrial-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005052124.1 True 2720 mRNA 0.41 4 45968464 45972013

Neighbor

gene id symbol gene type direction distance location
LOC110525032 NA coding upstream 9165 45958430 ~ 45959299 (+)
LOC118964875 NA coding upstream 67344 45899919 ~ 45901120 (+)
LOC110526902 NA coding upstream 94755 45872819 ~ 45873709 (+)
LOC110526036 LOC106584896 coding upstream 130725 45813398 ~ 45837739 (+)
si:dkey-174n20.1 LOC106584900 coding upstream 314397 45647734 ~ 45654067 (+)
LOC110526042 LOC106584891 coding downstream 104071 46076084 ~ 46190292 (+)
LOC110526905 LOC106584888 coding downstream 227506 46199519 ~ 46263098 (+)
ascc2 ascc2 coding downstream 473943 46445956 ~ 46461957 (+)
LOC110526048 sec14l2 coding downstream 499471 46471484 ~ 46514756 (+)
LOC110526049 LOC106570833 coding downstream 570591 46542604 ~ 46567635 (+)
G513043 LOC100136024 non-coding upstream 61901 45904093 ~ 45906563 (+)
G513033 NA non-coding upstream 105281 45851233 ~ 45863183 (+)
G513030 NA non-coding upstream 160225 45808015 ~ 45808239 (+)
G513024 NA non-coding upstream 170656 45797501 ~ 45797808 (+)
G513021 NA non-coding upstream 174679 45790666 ~ 45793785 (+)
G513363 NA non-coding downstream 161185 46133198 ~ 46141623 (+)
G513377 NA non-coding downstream 221415 46193428 ~ 46193656 (+)
G513379 NA non-coding downstream 223225 46195238 ~ 46195439 (+)
G513380 NA non-coding downstream 223763 46195776 ~ 46196008 (+)
G512912 NA other upstream 332214 45635589 ~ 45636250 (+)
LOC110526028 ccdc60 other upstream 747682 45187119 ~ 45236944 (+)
G512192 LOC106584908 other upstream 782595 45184439 ~ 45185869 (+)
G510416 NA other upstream 2309971 43657468 ~ 43658493 (+)
G509160 NA other upstream 3398295 42567105 ~ 42570169 (+)
G513501 NA other downstream 387943 46359956 ~ 46360585 (+)
G513745 NA other downstream 928548 46900561 ~ 46901123 (+)
G514464 NA other downstream 954829 46926842 ~ 46927714 (+)
G514499 NA other downstream 1050281 47022294 ~ 47023092 (+)

Expression


Co-expression Network