LOC110526905 (LOC106584888)


Basic Information

Item Value
gene id LOC110526905
gene name LOC106584888
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 46199519 ~ 46263098 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036980249.1
CGCAATCCTAGCCCCTTGTCACAAACAGCAGTTATTTTAAAACTTCAAACTCCGCCACCTCGAGACGACCATGGCAGTAGTAACGACGCTAAGATTGACCAAACCAAACTGACGGATCTCTTCTTTAATTTAGGAATAAAACTAAAACGATCACCCGCCTCCTCGCGCTGAGTCTCATCCAGGTTCAGTTGTTCTCCTCCTGGTGGCGCGTATCCAATGTCTATACCGGTAGTTCTCCCCGGATCGTGTTACCCTGTAACTAGGGTTTCTTTGGGTTCTCAGTTGGCAGACTCGTCGTTCAGGAGCCGGCCGCCGCGCTGTATATCTAGCTCTCGCATGCCTGGTTCTCAGTCGCAGCTGCTACCAGCGCTTCTCCCCGGCGGCCCACTGCTCTCCCTCGGATTACTGCAGCTGGTTCTCGGCTGCTCCATGGTCGCGCTCTCCTTCTCAGCTCTCTCCCTCAGCAGCTCGCCACCCATCCGAAACTCATGCCCTTTATGGGTCGGATCTTCAgTGATCCTGTCAGGGATCGTTGGCCTCACAACATGGAGGAGACCCATGCTGCTGCTGGTGAATATGTTTGTGCTGTCGTCAGTGGTGTGTGTTCTTCTCAACCTGGCCGGCTTCATCCTCTGCTGTCAAGGAGCTCAGATGGTCTCCACCATAACCAACTGTCaactgAGTGAGGTGGGAGATGTGTGTAACTGCTGTCCTCAAACCCCCACTGCCAAATGTCCTGAGGACAAACTACTCAAACTCTACCCTGGACACTCCTGTAGTACCATGAGGGTCCTGCTCAAGAAGGTTCTGTTTGCGCTATGTGCTCTGAATGCTCTGACCACTGCAGTGTGTCTGGTGGCTGCTGCCCTCCGATACCTACAGGTCTTCACCACCAGAAGACCATGTATGGATGATCCCAGGCCAATtgcagaggaggtggaggagccaACTAATATCCCTGACCCGGATGAGTTTGTCCCCcctgcccctcccccctcctacTTTTCAACCTTCTACTCCTACACACCACGGCTGGCTCGCAGGATGTTTGGGGACAGTGTGACACCACTACCTCATATCTATGGTGCCAGGATTAAAAGAGTAGAGGTGTTCAGTCCTTTAGACCCACCCCCTCCCTACGAAGCTGTTACTGGAGGCTCCGCCCTGGCCACCGCAACACAGGAGACAGAGATTCAGATTCCCGTGACGGATCTGACAGAGTTGACAGAAGAGTTGAATAACAGCTCAGAGGCGGGTACTTCAATTAGAGACGTTGGTCCCCAGACGACGGTTATGGCGGTGCCCACGTCTCCGCCGTCTTACCCCTCTCCCCGATCACCCCCCCTACTCCAGGCCAGACCCCCCCAGGGTACCCCGGTGCCCCCCGTCAGGAGGTCTCAGCGCCAGAGAATTATGCGATCCTACAGTGACCCCGTACTATTGGACCTGGCTGCCAAAGtATTAAGTTGTGAGGTGGCCACGCAGACCACCCAGACTTCCACCCAGACTTCCCAGTCCGCACTGGCCGCCCAGTCCTCTCGGACCCAGACAGTGACCCTCCGGCAGGGAGGTAGAGGCCCTCGGCGGCCCCGGCCCTCCTCCATGGTGGACTACCAGAGCTACAGACACACCCAGCAGCTGGTCAGTAGGTTCCTGGATCAGCCGGTCCACTGCAGCCTGACTCCCGAGGTCCAGGAACTGGTGGACAGCATCCGCAGCGTGCTGCGCTCTGACCAGAAACAAATGGAGGAGGCCGTACGCTGTGCCAGCTACATAGAACAGGTGATCACAGTATCAGAGAGAGCAGCTATCctccagcccctctccctccccaggcCCCGCTCCAGACCCAGTGCCCCCCTGTTGAACTGTTCCTCCCAGACCCTGCCCCAGCCCCTCCGGGAGAGACCCTGGTTGCTGCACCTCGGGAGCTGTGGGGATCTCAGCACCTTCACCTGGGTGGAAAAGCAGCCGCTAGAGGACAGGCAGGGTGGTGGCTCTGGCTCCAGGTCCTGGTCTAGAGCTGGGTCTAGGGTGGGTTCTAGGTCGACGTCACGGGCGGGGTCACGCCTGGATCATCGCGAGCGCCCCCACAGTCTCATAGGGGTGTTCAGGGAAACTGTGCTCTGATGGAACTCTGTTATCCCATCTCAAAACCTCCCTAGCGAAGAAATAATGGTATGCTCCACTGGGGGAAAACAGCCCATTGACTCCAAGTGAAGTGCTCCTACTAGTGGTGAGGTTTGGGACTGCCACTGCTAAAGCTAGTGCCCTGCCACTTGATTTTACATAATCATCAGTACTCGGTCTGGTTGGCTGATACGTGCAGCAGCAACACAGGTAGTCTGTACCTAACCACATACTAAAATATCCACACATGTCACTAGCCAGCCATATACTGGATCATGAGTTAGACGATTGTGCATATTCTATTATGAAGTTATTTAATAATTTAAGAGCATTTATTGATCACAATCAGTAAAAAATAAatcaagctagctaactagcagttTAACGTCAATCATCAACAATGATCAGCTGTATCCTCACCCTATTTTCCCATAGTCAATCATGTATTTTTCTGATGAGTGTGTTGttgcaaaaataaataggcttatgcaaaaaaaaaaagttagaaTGAATTTCGAGATTGAAAGTCTTTCTTTTTCTTCGACCCTGCTAAGACAGCAATTTTGCACTGAACAATAAGAGCTCCATCTGCATCTTTCAAAGGAAATGTTTCCACATTTGCGGTAAATGCTATATATGTCTGCTCAATTGAAAATTACCTTCAAAGGTCAATCGCGCTTGAATTTAGGCCTAACTGGAAGGAGAACTGCATGTGAGAGTCTATAGAAGGAAGTCTCTCTCTACACTTCACTATCTACCCAGGAAAATACAGGTCTACCCCTTCTGCCTGTAATGTTCCAAATCATGTACATTTGAAATGACCAGTGAATTACACTGGTCATGCAATGCTAAATTTAGCTTCAATTCATTAAATCAAACTGCATCCTTTAGACTGGGATTCAACCCAATGCGCATTATAGAGCAGTGCACTGGACAGCGACAATGtgccttttaaaggcaatgtcccTAACATTAGCAGAGATGCCATTCATGGTAAATGCTGCTGATGTTCCCAAGCTTAATTACCTTTAAAGGGCACATTGTCGGCTGTCCAGTGCATTGCTCTACAACAAGCCTTGGATTGAATCCTGGCCTTTAAAGGCAACGAAAGGTGGTCTGTGTGGTCCAGTGGTTACAGCCGCTGACCCCGGCACACATGTATGCCAGTCGGCATGGGGTCAAATCTGGCCCACTGCCCTTTAACTCACTCTTCCCCATATTCCACGCTGTAGTACCTCTTCAATAAAGAAATCAAAAGGACTGCCACACTCTTTTAA

Function

NR:

description
PREDICTED: protein FAM189A2-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036980249.1 True 3407 mRNA 0.51 10 46199519 46263098

Neighbor

gene id symbol gene type direction distance location
LOC110526042 LOC106584891 coding upstream 9227 46076084 ~ 46190292 (+)
LOC110526904 NA coding upstream 227506 45968464 ~ 45972013 (+)
LOC110525032 NA coding upstream 240220 45958430 ~ 45959299 (+)
LOC118964875 NA coding upstream 298399 45899919 ~ 45901120 (+)
LOC110526902 NA coding upstream 325810 45872819 ~ 45873709 (+)
ascc2 ascc2 coding downstream 182858 46445956 ~ 46461957 (+)
LOC110526048 sec14l2 coding downstream 208386 46471484 ~ 46514756 (+)
LOC110526049 LOC106570833 coding downstream 279506 46542604 ~ 46567635 (+)
msh3 LOC106584876 coding downstream 311837 46574935 ~ 46708962 (+)
rasgrf2b rasgrf2 coding downstream 459862 46722960 ~ 46900004 (+)
G513380 NA non-coding upstream 3511 46195776 ~ 46196008 (+)
G513379 NA non-coding upstream 4080 46195238 ~ 46195439 (+)
G513377 NA non-coding upstream 5863 46193428 ~ 46193656 (+)
G513363 NA non-coding upstream 57896 46133198 ~ 46141623 (+)
G513427 NA non-coding downstream 24 46263122 ~ 46267533 (+)
G513502 NA non-coding downstream 104554 46367652 ~ 46367855 (+)
G513523 NA non-coding downstream 228306 46491404 ~ 46516159 (+)
G513619 NA non-coding downstream 383870 46646968 ~ 46697374 (+)
G513746 NA non-coding downstream 638452 46901550 ~ 46903598 (+)
G512912 NA other upstream 563269 45635589 ~ 45636250 (+)
LOC110526028 ccdc60 other upstream 978737 45187119 ~ 45236944 (+)
G512192 LOC106584908 other upstream 1013650 45184439 ~ 45185869 (+)
G510416 NA other upstream 2541026 43657468 ~ 43658493 (+)
G513501 NA other downstream 96858 46359956 ~ 46360585 (+)
G513745 NA other downstream 637463 46900561 ~ 46901123 (+)
G514464 NA other downstream 663744 46926842 ~ 46927714 (+)
G514499 NA other downstream 759196 47022294 ~ 47023092 (+)
G514662 LOC106597055 other downstream 1040085 47303183 ~ 47329244 (+)

Expression


Co-expression Network