LOC118964876


Basic Information

Item Value
gene id LOC118964876
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 46931084 ~ 46935277 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005052125.1
gggggagattactgtcacattggaggaagaggaggaggttggGGATCTgtttaacaccaGAGAGAGACGTGACTGTTGTGGATTCTCTGtagagcctcaacaacatcatgatgCGGCacagaagagtctctccagatcagaacacctcaagaaacaccagcggacacccacagggaagaaatctcaccgctgctctgactgtgggaaaggTTGCAAATCTTCATCAGAACTTAAAATACACCAGCTAGTGCACACACGAGAGAAATCTCACCACTGTTTTGATTGTGGGAAGAGTTATTTAAGAGTAAAATCACTAAAAGCACACATgagaattcacacaggagagaaatattttagctgtgatcaatgtgggaagagttttactgcATCAAGCCATCAGattgtacaccagagaacacacacaggagagaaaccatatagctgtaatcaatgtgggaagagttttaaaaGATCTAACCATCTTATTTTACaccaaagaacacacacaggagagaaaccttatagctgtgatcaatgtgggaagagttttactcagctaaGCAACCTGATATCACacaggagaacacacacaggagagaaaccttatagctgtgatcaatgtgggaagagctttACTCAGCCAAGCAACCTGACACGACACATGAGaacacacacgggagagaaacgTTATAGCTGTGACCAGAGATAATCTGATTAAAGATCTCTGATCAAATATTATAATATACatacatgaaggagttgtttcatgatttcaatgaattaatgtcacaatgtagaatgtttaacattgtagtaggaatATTTTCATGATGTCAGAATGTAGAAGCCTAAACGTTTGCCTCTTATCAATTGATTTcagcatgatatggatattaACCTCAGGGgaaaaatccaggctctgaattgaTTTATGTAATTTAACAAAAATTGACTAACAAAAAAAAGTTGTTAAACTtacccacttgaatcaaaatgcaacacttcaaaatgtagctagctgttttCTACAAATTGTCCCCTAACCAGGGATGTACACATTACTCCCATATTCcgtgtggtttttgagctgttagttttaacaggacgtgcaacctcatctccctcctctcgcacaattgatttcaacatgatatcGATGAGTGATGACAAATAAGTGTTGCGTTCCTTTGTTTAGCGACCCCTACATTTAAATGCATCTctccaaaatgtagctgactgtcttctgcaggttgtcctctaaccagtgaggtaAAAGATATCTCcaatttccatgtgttttttgttgttgttagtttcaacagcaagtacaacctgatttcccccttaatcgatatcagtgatttattgctgcttgtgcagtttataaggtgcttgtttaaaaaaatacaagtaaTATGATTATTGTGGCAGATGTTTGTTTACATAGCACATTTTTTGTTTAGATTTTCAATATATCACTAACGttctgcatattggttattgatttaGACACGTTaaaactgtgttttgacattgtCGTTGAAAATCTGTTGAAAGTAGACTATGCAACCAAATATTTAATATTTACATTTCATGTAACATTTAGTAATGATAATTATTCATGCAACTAACTGACCATTTTTTTTGTACAATTATAATGACATTGTTGCCCTGCTTTTATAATATCAGGGTTCATTCTCAGATGTGCCAAACCAAATGTACTCGAGCATGACATTGGGGACTGGGCCCAGATCCAACAACATGCCTATCTAGTGAAccctggaaagagagagaaggtccGCAGTGAGGTGGAAAATTACTACGGATATTGCAGGAGTTTCCTCTTGAAA

Function

NR:

description
zinc finger protein 239-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005052125.1 True 1850 mRNA 0.38 2 46931084 46935277

Neighbor

gene id symbol gene type direction distance location
rasgrf2b rasgrf2 coding upstream 31080 46722960 ~ 46900004 (+)
msh3 LOC106584876 coding upstream 222122 46574935 ~ 46708962 (+)
LOC110526049 LOC106570833 coding upstream 363449 46542604 ~ 46567635 (+)
LOC110526048 sec14l2 coding upstream 416328 46471484 ~ 46514756 (+)
ascc2 ascc2 coding upstream 469127 46445956 ~ 46461957 (+)
LOC110526054 NA coding downstream 22225 46935543 ~ 46978128 (+)
LOC110526907 NA coding downstream 58319 46993596 ~ 47004352 (+)
si:dkey-88e18.2 il12b coding downstream 175535 47110812 ~ 47119011 (+)
LOC110526052 hic2 coding downstream 215623 47150900 ~ 47217434 (+)
LOC118964877 NA coding downstream 460090 47395367 ~ 47398426 (+)
G514460 NA non-coding upstream 1298 46929398 ~ 46929786 (+)
G514449 NA non-coding upstream 10530 46919624 ~ 46920554 (+)
G514440 NA non-coding upstream 15824 46914969 ~ 46915260 (+)
G514436 NA non-coding upstream 18230 46912602 ~ 46912854 (+)
G514433 NA non-coding upstream 20173 46910533 ~ 46910911 (+)
G514459 NA non-coding downstream 33647 46968924 ~ 46973262 (+)
G514486 NA non-coding downstream 70029 47005306 ~ 47005664 (+)
G514487 NA non-coding downstream 70564 47005841 ~ 47006197 (+)
G514464 NA other upstream 3370 46926842 ~ 46927714 (+)
G513745 NA other upstream 29961 46900561 ~ 46901123 (+)
G513501 NA other upstream 570499 46359956 ~ 46360585 (+)
LOC110526042 LOC106584891 other upstream 740792 46076084 ~ 46190292 (+)
G512912 NA other upstream 1294834 45635589 ~ 45636250 (+)
G514499 NA other downstream 87017 47022294 ~ 47023092 (+)
G514662 LOC106597055 other downstream 367906 47303183 ~ 47329244 (+)
G514665 NA other downstream 371161 47306438 ~ 47320050 (+)
LOC118964881 LOC106585521 other downstream 578509 47425001 ~ 47519480 (+)
G515069 NA other downstream 1014729 47950006 ~ 47952254 (+)

Expression


Co-expression Network