LOC110526279 (LOC106587285)


Basic Information

Item Value
gene id LOC110526279
gene name LOC106587285
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 61961386 ~ 61964415 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021607100.2
AAAACGGATGTTATATTTTATCCTCTAGATGTCAGTCGTACTATGCAGCACAAAACCGATACTGAAGAAGAAACTTAATTGATACATGGGCAAATCTAATGTCACCGTAACTGTAGCGAAACAGTCATGCTTCCGCATATTGTCATTTTTTTTACCTATTTGACTAGCCTTTCAGATCAATAGTGTGCTGCCTCTTTCACTCGTCATACTTCCTTGTTCCTATGTTATTTCTAAATCAGATAAGAAGCGTGTAGCCTAACTAAACAGtctttttcaacaacaacaacaaatatgcAGGGTGGTGACGGTGACCAAACGCCTATAGCACGTAAAGAGGCTTTCGACGATTACCTAAATTACTATGATCAGATTTGGAGTAAGGGTAACCTGAAACTATGCCAAGAGAAACAGGTTACCGTGGAAGCTAGACGATTTTTGCTGTTAGAAACAGACCCTGGAGAAAGATTTTCTCATTTTGACTTCTACTTTACTGCATCCGAATGCGTAAAACAAGGCTTTAAAGATTGTCGAACATTCTTCAGCGCGCTCATTAAAGCCACAGAGGTGTTGGAGATGTTCTGTGTAAATCTGTTTCTTTACCCGTGGAAGAAGGAAATCAAGATTGTCAagACTTTCACTGGCCCCTTCGTCTACTGCATCCAGCCAGTCCTGACAAAGAGTGCCACGAAAAGTATCCTTGAAACGATAGGATATCATCTGGAAACTGACACAGAGTACCGACTCACAAACAATGCAGACCCTGAAACAGCCATGAAAATGGGTTTTGAGCTTTTCCTGGCGCGAACAGAGTGTGAGTACCTGTTGGAGCTCATGGGTCAGCGGTCACAGCATGAGTGTCTGGAGATTCTACAGAGGAGAGCTGCACGACTACCTCACACCCAGAGGGCTGCCGAGGAGACAGCAAAGGAGTCTGAAACAGAGCCCTTACAAATGCAGAAAGAAGAGGAGAACGAGGATAAGGGTCTATCAAATGGTTGTTCCCTGGTAGACCCAGGACCAGTGGAGACAGATGAGGGAGACTTAACCGAGGAGAACCCTGTCACCGCTAGCACACCAGGCAGGCAACAGGATGATGGACAGATACCCCTCAACCTGGAGGTTCAGTCCATTGAGACGACACACTCTCCAGGAATCAGACCACCCAGGGCATTCTTGAACGATGACAGGTCTATCCTGGAGATTCAGCAGAATTACCCAGACCTTGCCATAAGGCAGAAGCCAATATTCAGTAAGCTACTGGGTGGACCTCCTGTATCGCGAAGGCGACTTATCAAAGAGAACGCACCCGATGAAGGTGGCAGTGCAGCCAATTTAGCTGGCAGTGATGTAAGTGGTCCCCAGTCCATCTCCATTCACACCACAGCAGCACCAAAACCCCATCTCACAGAAGCAGTCCCAAAACTCCAGCCTCCAGAAGATAAGGCCTACAAGACTACTGCCACGCTCCACGGACCAACTCCTCCACAGGTAGAAGTGACCAAAGAGGGTCAGGAGGCCGATGATGCAGATGAGCTGACCAAGCTGGCTGAGAGGATTGGCCAACTGCATGTCCATGAGCACAAGATGGAGGACAACAAGGTGAAGGAGAACCTGAAATACCCAGTAGAAGAGACAGCACCACCACATGCCAGTTGCAATGACCATGATGGGTCCCCTCAACAGGATTCTGCAGGGGACCAGAGCCAGCCCCTAATGTGCCATCCTTCTCTGGTGCCGGTTTGTAACATCCCAGGCTGTAGCACCTGTGAAGTAGCAGACGGTCCCCACAAACACATTCTTAGTAGGGACACCATCAAAGAGCCACCTCACTCCATCTATGTCCCAACCAGCCACCTGGACCCCTCAGTGTTTGACCCTACTGCTGCTGACCACCAGCCCTCCACAGGCCCTCAGCACCAGGACATGGAGGGCCCCATCCCTCAAACCACAGAGGACGAGCTGCTTCAAACCTATGTCATGGTGGACGAGCCTTAGAGGAAGTAAGGTCATGATCAGAACACAGAGGGAAATTGATTGACAGGTCTGAAACATCACTTGCCACTAAGTTGTTTTTGTCTGGGGCGAttcaatcagtggaggctgctgaggggagaatggctcataaatgtctggaattgagtaaatggaatggcatcaatcCATGTTTCGATACCATTCCAATctttctgctccagccattaccacaagcccgtcatCTTCCAGTTAAGGTgcaaccaacctcctgtggatTCAATGTATGAAGGTGACAAGAATGACCTCGTTGAATTTAATGCGTCTTCTGTATTTTCTGGCATTTGCTTTGTACTGTTTCTCAGGTGATAGACTTTTAATACAATGTTAATTATGCTTGACCTAATTTATGAGGTGGAGGTAATGTTTCCACTGTGTCCTCTTACAGTGACAGTGCCTTACTGAAATGTATTCTATGCCAAACCTGCACTTACTTTCCTTGCTCATTGTCATTGAGACTACTGAATGCTTTGTAATGTTTATGAAAATGTTAGTCCAATTGTATTCAGAATGTTATGACCTTTTTTAACTCATAAAAATGTGAAAAACTTTCATGGTCTTCAGAAGTTCAAGTGGATCATACAAAAGACAGTTACACTAACTTTATTCAGCAATATTGCATAAATTAACATGTTATTGTACAAAAATCATTTTTAGGCATTTATTAAAACGAACTCAGCgaaaaaag

Function

NR:

description
uncharacterized protein LOC110526279

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021607100.2 True 2719 mRNA 0.46 2 61961386 61964415

Neighbor

gene id symbol gene type direction distance location
LOC110526278 LOC106587286 coding upstream 3177 61903571 ~ 61960273 (+)
LOC110526277 LOC106587287 coding upstream 59385 61885833 ~ 61902001 (+)
LOC110526274 LOC106561991 coding upstream 1097926 60815583 ~ 60863460 (+)
LOC110526270 LOC106587291 coding upstream 1208603 60671708 ~ 60752783 (+)
LOC110526268 LOC106587295 coding upstream 1436143 60507959 ~ 60525243 (+)
LOC110526282 LOC106561985 coding downstream 7072 61971487 ~ 61979527 (+)
LOC110526284 LOC106587278 coding downstream 61673 62026088 ~ 62032556 (+)
LOC110526286 ca7 coding downstream 106846 62071261 ~ 62084069 (+)
LOC110526289 LOC106587268 coding downstream 319955 62284370 ~ 62299748 (+)
LOC110526291 LOC106587268 coding downstream 363938 62328353 ~ 62346632 (+)
G531252 NA non-coding upstream 65491 61895416 ~ 61895895 (+)
G531184 NA non-coding upstream 163851 61797329 ~ 61797535 (+)
G531180 NA non-coding upstream 168138 61792807 ~ 61793248 (+)
G531156 NA non-coding upstream 197053 61763969 ~ 61764333 (+)
G531331 NA non-coding downstream 77925 62042340 ~ 62042547 (+)
G531332 NA non-coding downstream 78303 62042718 ~ 62042987 (+)
G531333 NA non-coding downstream 78732 62043147 ~ 62043433 (+)
G531334 NA non-coding downstream 79870 62044285 ~ 62044504 (+)
G531339 NA non-coding downstream 87155 62051570 ~ 62051804 (+)
G528653 NA other upstream 2189302 59771708 ~ 59772084 (+)
G527450 NA other upstream 3182369 58778723 ~ 58779017 (+)
LOC110526933 LOC106562045 other upstream 3589418 58318920 ~ 58408967 (+)
G526628 LOC106587143 other upstream 3688550 58272079 ~ 58272836 (+)
G526547 NA other upstream 3848567 58110906 ~ 58112819 (+)
G531406 NA other downstream 185358 62149773 ~ 62152218 (+)
G532259 NA other downstream 856005 62820420 ~ 62822616 (+)
LOC110526311 LOC106587159 other downstream 1047843 63005672 ~ 63068991 (+)
G532237 LOC106591742 other downstream 1068516 63032931 ~ 63198734 (+)

Expression


Co-expression Network