G465378


Basic Information

Item Value
gene id G465378
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 2475968 ~ 2480509 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU528528
ctactaacagagtggtctcagccaccagacagaggttcactactaacagagtggtctcagccaccagacagaggttcactactaacagagtggtctcagccaccaaacagaggttcactactaacagagtggtctcagccaccagacagaggttcactactaacagagtggtctcagccaccagacagaggttcactactaacagagtggtctcagccaccagacagaggttcactactaacagagtggtctcagccaccagacagaggttcactactaacagagtggtctcagccaccagacagaggttcactactaacagagtggtctcagccaccagacagaggttcactactaacagagtggtctcagccaccagacagaggttcactactaacagagtggtctcagccaccaaacagaggttcactactaacagagtggtctcagccaccaaacagaggttcactactaacagagtggtctcagccaccagacagaggttcactactaacagagtggtctcagccaccagacagaggttcactactaacagagtggtctcagccaccagacagaggttcactactaacagagtggtctcagccaccag
>TU528529
ctactaacagagtggtctcagccaccagacagaggttcactactaacagagtggtctcagccaccagacagaggttcactactaacagagtggtctcagccaccaaacagaggttcactactaacagagtggtctcagccaccagacagaggttcactactaacagagtggtctcagccaccagacagaggttcactactaacagagtggtctcagccaccagacagaggttcactactaacagagtggtctcagccaccagacagaggttcactactaacagagtggtctcagccaccagacagaggttcactactaacagagtggtctcagccaccagacagaggttcactactaacagagtggtctcagccaccagacagaggttcactactaacagagtggtctcagccaccaaacagaggttcactactaacagagtggtctcagccaccagacagaggttcactactaacagagtggtctcagccaccagacagaggttcactactaacagagtggtctcagccaccagacagaggttcactactaacagagtggtctcagccaccagacagaggt

Function

NR:

description
PREDICTED: proteoglycan 4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU528528 False 613 lncRNA 0.51 3 2475968 2480509
TU528529 True 582 lncRNA 0.51 2 2475968 2479994

Neighbor

gene id symbol gene type direction distance location
mtmr12 mtmr12 coding upstream 29498 2410231 ~ 2446470 (+)
zfr zfr coding upstream 66707 2342330 ~ 2451362 (+)
LOC110525063 LOC106570939 coding upstream 276074 2149240 ~ 2199894 (+)
LOC110525062 LOC106570947 coding upstream 370827 2002088 ~ 2105141 (+)
LOC118964805 NA coding upstream 1473680 997029 ~ 1002288 (+)
pdzd2 pdzd2 coding downstream 72702 2553211 ~ 2714300 (+)
LOC110516346 NA coding downstream 243256 2723765 ~ 2724931 (+)
LOC110525071 LOC106585963 coding downstream 263455 2743964 ~ 2866482 (+)
isl1 isl1 coding downstream 604172 3084681 ~ 3092690 (+)
fst fst coding downstream 983160 3463669 ~ 3491741 (+)
G465353 NA non-coding upstream 905 2394482 ~ 2475063 (+)
G465362 NA non-coding upstream 51463 2420838 ~ 2424505 (+)
G465354 NA non-coding upstream 72922 2401504 ~ 2403046 (+)
G465318 NA non-coding upstream 153287 2322438 ~ 2322681 (+)
G465394 NA non-coding downstream 38301 2518810 ~ 2520811 (+)
G465451 NA non-coding downstream 166752 2647261 ~ 2649273 (+)
G465454 NA non-coding downstream 176232 2656741 ~ 2657202 (+)
G465458 NA non-coding downstream 188234 2668743 ~ 2669734 (+)
G465461 NA non-coding downstream 196328 2676837 ~ 2677087 (+)
G465355 NA other upstream 69878 2405119 ~ 2406090 (+)
G465203 NA other upstream 411901 2062328 ~ 2064067 (+)
G464705 NA other upstream 1246869 1228705 ~ 1229099 (+)
LOC110525138 rufy3 other upstream 2016962 442716 ~ 549899 (+)
G465578 NA other downstream 498333 2978842 ~ 2982425 (+)
G466813 NA other downstream 1292355 3772864 ~ 3773340 (+)
G468732 NA other downstream 3627870 6108379 ~ 6156681 (+)
G468643 LOC106607869 other downstream 3714263 6194772 ~ 6199155 (+)

Expression


Co-expression Network