G505697


Basic Information

Item Value
gene id G505697
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 39582011 ~ 39587770 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU574128
AAAGACATACACAGTTAAGACATCTTagtttctttattttgtattcatttggaaaatgttctatcattttatttcattttgaaAACGTGGAGTAGATTGTGTTGATTGTATTCCagttttaaatgtaattttatggcagaaaatgtgaagactgtgaaAGGGGTCTGTAGACTTTCACTAGTGACTGTAGGTGAGTCCTCCCTTACTAAACAAACCCAATCAAATGATAACAGCTGTCACATACTTAACCTATAAAGAATTGCCATACTGTATCTTCAGTGTGTATATAGTTTATGTTTATGGTGTCTGGTTGGACAGTTATCTGTAAGACTGGAGGGCTTTTGGTTGTATGCTCAGGCTGTAGTTGTCATTTGTTTTTGGTGGTTTACAGTATAACCCTGATTTCTGAAGGTGGTTTTAGATAATTGATTAAGTTTGTACAGTACAGCtatatgtagt

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU574128 True 459 lncRNA 0.34 2 39582011 39587770

Neighbor

gene id symbol gene type direction distance location
foxd5 LOC106584956 coding upstream 46222 39533936 ~ 39535789 (+)
cbwd cbwd1 coding upstream 55365 39521723 ~ 39526646 (+)
LOC110525923 NA coding upstream 176750 39402537 ~ 39405261 (+)
fancc fancc coding upstream 269913 39269915 ~ 39312098 (+)
trnaa-ugc-17 NA coding upstream 293349 39288589 ~ 39288662 (+)
LOC110525927 smim15 coding downstream 86194 39673964 ~ 39680031 (+)
LOC110525928 LOC106585161 coding downstream 146933 39734703 ~ 39750180 (+)
LOC110525933 LOC106585165 coding downstream 295007 39882777 ~ 39901525 (+)
LOC110525934 LOC106580580 coding downstream 328368 39916138 ~ 39921723 (+)
LOC110525942 LOC106585173 coding downstream 559566 40147336 ~ 40154986 (+)
G505333 NA non-coding upstream 50820 39435988 ~ 39531191 (+)
G505377 LOC106605384 non-coding upstream 97342 39464768 ~ 39484669 (+)
G505363 NA non-coding upstream 149110 39432680 ~ 39432901 (+)
G505359 NA non-coding upstream 151979 39429805 ~ 39430032 (+)
G505356 NA non-coding upstream 155108 39426668 ~ 39426903 (+)
G505795 NA non-coding downstream 79484 39667254 ~ 39667805 (+)
G505803 NA non-coding downstream 83383 39671153 ~ 39671452 (+)
G505827 NA non-coding downstream 128621 39716391 ~ 39717493 (+)
G505857 NA non-coding downstream 177198 39764968 ~ 39765533 (+)
G505865 LOC106585162 non-coding downstream 185043 39772813 ~ 39776463 (+)
G499111 NA other upstream 5430274 34151140 ~ 34151737 (+)
LOC110525816 LOC106585060 other upstream 6116956 33447246 ~ 33465055 (+)
c6h22orf39 cssa24h22orf39 other upstream 6261663 33317578 ~ 33320353 (+)
LOC110525799 LOC106585046 other upstream 6417750 33135282 ~ 33165186 (+)
G505988 NA other downstream 374882 39962652 ~ 39963098 (+)
G506095 atp5a1 other downstream 609030 40196800 ~ 40203886 (+)
LOC110525949 LOC106585178 other downstream 669297 40256994 ~ 40259050 (+)

Expression


Co-expression Network