G506019 (LOC106585169)


Basic Information

Item Value
gene id G506019
gene name LOC106585169
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 40021735 ~ 40026395 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU574491
CATTTATTTAGGTTTCTCCATACCATACATTTTACTGTACAACGGCACATATTTCTGAAATAACTCCCATTATAAAATAGGGCATCTACAATTAAGGTACAGTCATAAAATGCTTTCAGGGAAAAAAGACGACAAAAGCAACAGTAGAACATCTTCATATAAAGCGCAGGGGATTCAGGAAATGATTTGTTGTCGACAAAGCAGAGATTCAGACCACTCATTTCAGAGTACCTTCCATCCTGCTTAAGACCCGTTTTCTCTTGGTTTTGAACTGAGATCTATCAGTTGAAAACAAAATATGACATAACTGGTGCAAATTTCAAGCCAGAACCTTGATTTAGGACTGCAAATCAAATTTGGAGAAGCAACACAATTTTTCTGTACGATCAGAAACTAATATCATTGTTATTTCTCGTTTTTTCCCCTGACATGGTCAAAAGGTGGGAACAATCACTAATACACACAAGAAAGTGGATACCGTCGAAGCGACAAGTAAATTAGCTTATCATTAACATAGTCAACATCAGTAATGATTGTTCAAAAATCCATTAGAGTGGATCTGCAGTCAAGCTGACAAAAAGCTATGTGGATCTAAGCGTGTGGTTGGGCCTATAGTGGGCCTGTGTCATTTCAAATAAAGTACATAGACCTACCAGCTTCAGTGTTAGTTCACTAGTGTTTCAGGTGTGGAATATACATGACATTTGACATCCAAGCTGTGTATGAGGGAGTGTGTATAACTAAGGAAAGAGAAAAGATACAATCTGCCATTATATGAAGTGAGAAGCCATTGTCTTTAACAGACATtcaaagaagagaaagagaagattTGTCTGAAGTCTTGAGGTAAGCAATGTGTTTCAATAGAACGCCCTACTGACAATCATATAGTTACAATCACCTTCTGTACAAACTTCCTGATTCACACACTGAACTGCAACAAGCCCCTATGCTAAAATAGAACAAAAAATAACTTTATGTGTATCTTCACAATCTGAAATGCAGGTTCAGTTAAATTATTGAcggggcgtcaggtagcctagtggttagagcgttgggcgagtaaccgaaagtttgctggatcgaattcccgagctgacaaggtcaaaatctgtcgctctgcccctgaacaaagcagttaacacactgttccccggtaggctgccattgtaaataagaatttgttcttaacggacttgcctttTTAAATTAATTCAAATAAAATAGACTTTAGTCCATTATTTCAGCTTAAAGAGGCTATGATGAGATTACGGCTACAAAGAGTTCCTTTATGCCGGTTTGAAAACACAACACAGACAAAGCATAATATTCAGCCACCTAGCAACACTCACACTGTACACACCTCCAACATTCTGTAAGAGTGCAAATTttgctgataaaaaaaaacatacgcTTGGCAAAATAATGAGCACgaattcctttaaaaaaaatagggGGGTAGATGTGGAGAGTAATGTGCTTGGAAATAACCCAATAAAACAAGGTAGGCTATGTATAGGAGCTGATAATGTCCACCTTTATAGATGTTTATATAATGTTTATACTTTAGAATGAGTTGAATGGGTTTGTGTTACCTCAAACCCCTGACACAGTGATACATCCAATTTGTTATAGGCTTCCCTTAGAGGGTAACATGACATCCTCTGGGCGAGCAGACACAATAGAACCATCTGGAACACAAGCAGCATCCTACTCACAGAATGACGTCACTGTAATTCTACAGTATGGTTCAAATGACCCCCTCCTACTTGTTCTGCTTTCAGAGCAGAAGACAAAGATCATATTTAACAACAGGCTACCGAAGATCTACAAGTACCTCAAAAACATTCATCCACTGAGTAGCTCCACTAATGAGATGTGTGTGTCTCttgtagatgggggggggggggggggggggggggtgaatgtcCTATAGTAACAGCTTGAACACTCACTGGCACTAAAGACTGTAAATGAGACATGACAAAGAGCAACAAATTCTACAAGGAAGATAAAACAACAAGGATGCTATCTGATGCTACAGTACTAGTGCTACCTGAACATGCTACTGATTGAGACTGCAGAGCTATGCTCCCCTGCCATACTATACCAttccccacaaacacacacacacaccctgaaatAAGGAAGGATTTCCCTCAtcatacaacactattattactGATTATCCATGACAGAATTGGGATTGCATACGGTACACCTTCTTAGAGACACCCTTCActgttatcatcactatcatcttATCATTTAAAATGAGTAAATTCTCCCAAATCACAAATGTTCCTCATCATAACAATACCATGTTGTCTATGGACACCCTAACCTTTAGCTCATTCTAGATATCCATGAGATTAGCTAAATGTGTCATTTGTGTGCACTATCCATTTAGTCAGATAACCCAGACGATTGCCCTAGTCAAACAACTCCAGTTGGATGCTCTATAACGGAATGCATGTAGAAAGTTTCCAGCAGACTTCAATCACTAGTCTGACTAAACCAGCCCACCAACACTCTGCTATACCATGGCTAGTCAGCTGTTGGCTTGACTGACCTGTCTAAATGCTAATCTCAAATGAAACCATTTTTATTATGtaattcactacttttgaccagagaaacACAGGGCATATGATCAAAAGTAGAACATTATATAGGGACCTAAACATTATATTTGAGACGAAGGCTAAATCCCAGTTCAGATACAACAGCCGACATGAGACGAGATAACAAGTAGCTCATTTTAGAacgttgtacaactgactaaaGAAGGGGAAATCAGATCAAGACGAGAAGTGCAGTTGAGACCTTTTCCACAGTAACACTGCCTCTTTATAATGACGTGATTAAACTTTGAAACGAAGTTGCCACTTGTAGCAAACGAGTGTCCTGAAATACATGCACCAGAAACAGGGTACACTTTATGACTTGTCAGATAAATACTTTTATCAGCAAGCTAGGCTAGCTATGTGCAGCAACATAGCTAGCTAATTGTCTGCTTGGCTGAACACAGAACGTTAGCGCATGTATTTCTGATTGGCTAAATGGATCAGTCTCGTCGCAAGACTTTAGCTAAAGCTTTGACATGTAGAATCTTGGGAAGCTGCAACCGACGACCTGAGACGTTAAGGCGACACCGTTCATATCAAACAAACTTAGTTCTACAACTCTTTAAAAGGTAGACTCGGCGGTATGACGTAGacgcagaaagtaaacagcacaGTGGGTAAATTTCCGCAACAACTTGACGCAATGAGGCTCAATTTCTCCGTTGTTTTTGGTCCTGTGCCAACAGCCTGAAGCGAACCTGCGCGCATGCGCAGATGGTGAGAGCGAAGTCTTGAAGTCGTTGCCGCACGTGGCAATGCCATTTCGCTGAGTTCACCTTAATAAAGACAGTTGCGTCGCGTCTCATTCTGTATTTGAACTGGGCTTAACAATTCTAACCCTCATCCTGAGTTTCTTAGCATAATAAGTTCCTCTCACTTTTATAAATACCATCAAGTACCCTATCCATATAATATCatttcatatacagtataatCTCATCTATTGTCATGAACAGCTATCCCTTTGGAAAGGACTAAAATAGTTTttaaattattaaaaaatatatcccCCATACAATAGGGGGGGCTCTGGGCCTATTCAACCTGCACTGGGAGATGGAGACAAGAACCATCGGAGCCCACAGACCCACCACACACATAAGCccaactacacacacaaacacattgctCCCTGTTCCAACTCCCTATAGCCAACACAGACCTTTACCTTCATAcccagcacgcacacacaaacacacccaggcTTGGTTCTGCTGACAGTAGAAACAGACATACACACTATGGCTTTCCAGAACTCTACTAGGGCCGTATAGACAGATCGGTGCCCTGGGGCTTGGCAGCTATTCAATAAACCAAGGGTGGGCATTCTTACTCTGCAGGCTTTGGCTCCAGCCAAGCTGAAATTCAACTTATCGACGCCTTGATTAAAGACTATGATTGGATGATTAGAAGAAGAATCAGTCCCATGTCTGTGATTTAGTGTTATCTGAACGCCACACCATCATGTACTTCTGTTGGGAGAAAAGGGATCCCATACAAAATTATCTGAGAGCAGCTTTACAGCATTAATGGGTATGTACCACAAATTAGTGGGGTCAGCGCTTGGTGGGGTCCtcattctctttctgtctcacacacacacaaacagacacacactctctctttccagCTAAGACTAGTGTAGCTGTGCTCacagtctctcactctctatctctccctatgtCTCAGATGAGCCTggcctctccctccatgtctggGGTCAGCTCACACACTCCAGTGAAGTGCATCTCCTTGCCTCTGGTTCCCTCAGACCTGGCACCTCTCTCCCCCAGGCAGGGTGAGGGTTGCTGGGCCATGGGGTCTGGGGAGGCCCGGGGGGCGCCGCCCGACCTTCTCTCCCTCAGGAAGATGTCAAGCCGACGCAGCATCTGCTTGGGGTTCTTTTTGGCAAACAGCTCCACT

Function

NR:

description
ELMO domain-containing protein 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU574491 True 4550 lncRNA 0.42 2 40021735 40026395

Neighbor

gene id symbol gene type direction distance location
LOC110525934 LOC106580580 coding upstream 100012 39916138 ~ 39921723 (+)
LOC110525933 LOC106585165 coding upstream 120210 39882777 ~ 39901525 (+)
LOC110525928 LOC106585161 coding upstream 271555 39734703 ~ 39750180 (+)
LOC110525927 smim15 coding upstream 343470 39673964 ~ 39680031 (+)
pgm5 LOC106585157 coding upstream 438308 39536644 ~ 39583427 (+)
LOC110525942 LOC106585173 coding downstream 120941 40147336 ~ 40154986 (+)
LOC118965025 NA coding downstream 133769 40160164 ~ 40165614 (+)
LOC110525943 NA coding downstream 145925 40172320 ~ 40178096 (+)
LOC110525945 LOC106585174 coding downstream 158776 40185171 ~ 40191808 (+)
LOC110525947 LOC106585175 coding downstream 178508 40204903 ~ 40215454 (+)
G505984 NA non-coding upstream 11397 39958868 ~ 40010338 (+)
G505997 LOC106584939 non-coding upstream 39077 39976466 ~ 39982658 (+)
G505972 npc1l1 non-coding upstream 79980 39941163 ~ 39941755 (+)
G505962 NA non-coding upstream 96551 39924895 ~ 39925184 (+)
G505955 gk non-coding upstream 109810 39908373 ~ 39911925 (+)
G506033 LOC106584485 non-coding downstream 23830 40050225 ~ 40050485 (+)
G506035 NA non-coding downstream 26063 40052458 ~ 40052693 (+)
G506038 NA non-coding downstream 29644 40056039 ~ 40056941 (+)
G506039 LOC108412098 non-coding downstream 35192 40061587 ~ 40062614 (+)
G506112 NA non-coding downstream 139949 40166344 ~ 40166961 (+)
G505988 NA other upstream 58637 39962652 ~ 39963098 (+)
fancc fancc other upstream 709861 39269915 ~ 39312098 (+)
G499111 NA other upstream 5869998 34151140 ~ 34151737 (+)
G506095 atp5a1 other downstream 170405 40196800 ~ 40203886 (+)
LOC110525949 LOC106585178 other downstream 230672 40256994 ~ 40259050 (+)
G506281 LOC106585187 other downstream 518468 40544863 ~ 40547513 (+)
G506285 NA other downstream 539672 40566067 ~ 40566429 (+)
fbxl17 fbxl17 other downstream 542331 40568637 ~ 40886427 (+)

Expression


Co-expression Network