G506251


Basic Information

Item Value
gene id G506251
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 40473106 ~ 40474139 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU574777
tatcgtgaccagtgagctgagttaaAGCAGAGCTTTActggtctggcgacgaatatgtaacgagggccagccgacgagagcatacaggtcgcagtggtgggtggtatatggggctttggtgacgaaacAGATGGCtatgtgatagactgcatcccatttgctgaatagagtgttggaggctattttgtaaacaaCATCGTCgaagatcggtaggatagtcagttttacaacggtatttttggcggcatgagtgaaggaggctttgatgTGAAAtaggaaggagagtttacagtttagccagacacctaggtatttgtagttggccacatattctaagtaagaaccgtccagagtagtgatgctagtctggcgggcgggtgcgggcagcgatcggttgaaaagcaagcatttagttttactagcgtttaagagcagttggaggccacggaaggagtgttgtatggcattgaagctcgtctggaggttagttaacagtgtccaaagaagggccagatgtatacagaatggtgtcgtctgcgtagaggtggatcagagaatcacccgcagcaagagcgacatcgttgatatatacagagaaaagagtcggcccgagaattgaaccctgtggtaccccccatagagactgccagaggtccggacaacaggccctccgatttgacacactgaactctatctgagaagtagttggtgaaccaggcgaggcagtcattagagaaacctaggctgttgagtctgccgataagaatacagtgattgacagagtcgaaagccttggccaggtcgatgaagacggctgcacagtactgtcttttatcgatggcggttatgatatcgtttagtaccttgagcgtggctgaggtgcccccgtaaccagctcggaaaccggattgcacagcggagaaggtatggtgggattcgaaatggtcagtgatctgtttattaacttggcggCACCTatataaagctgagtgactcgctcattcatggctttggatcaaaataaataagtacca

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU574777 True 1034 lncRNA 0.48 1 40473106 40474139

Neighbor

gene id symbol gene type direction distance location
LOC110515135 fabpl coding upstream 20944 40449567 ~ 40452162 (+)
LOC110525956 fabpl coding upstream 32195 40438659 ~ 40440911 (+)
LOC110526900 fabpl coding upstream 55662 40414867 ~ 40417444 (+)
LOC110525029 fabpl coding upstream 100345 40370165 ~ 40372761 (+)
LOC118964866 fabpl coding upstream 119097 40351412 ~ 40354009 (+)
LOC110525957 LOC106585182 coding downstream 1898 40476037 ~ 40489852 (+)
LOC110525959 LOC106585184 coding downstream 26518 40500657 ~ 40506112 (+)
avp neu4 coding downstream 43452 40517591 ~ 40519539 (+)
ccl27a ccl28 coding downstream 46835 40520974 ~ 40524282 (+)
slc35d2 LOC106585185 coding downstream 53699 40527838 ~ 40533844 (+)
G506250 NA non-coding upstream 679 40472001 ~ 40472427 (+)
G506198 fabpl non-coding upstream 62127 40409253 ~ 40410979 (+)
G506216 NA non-coding upstream 66221 40395345 ~ 40406885 (+)
LOC118965077 NA non-coding upstream 137558 40334257 ~ 40335548 (+)
G506195 NA non-coding upstream 161898 40310768 ~ 40311208 (+)
G506254 NA non-coding downstream 2876 40477015 ~ 40477223 (+)
G506249 NA non-coding downstream 16439 40490578 ~ 40490918 (+)
G506248 NA non-coding downstream 17207 40491346 ~ 40491768 (+)
G506247 NA non-coding downstream 17888 40492027 ~ 40493232 (+)
LOC110525949 LOC106585178 other upstream 214056 40256994 ~ 40259050 (+)
G506095 atp5a1 other upstream 269220 40196800 ~ 40203886 (+)
G505988 NA other upstream 510008 39962652 ~ 39963098 (+)
LOC110525928 LOC106585161 other upstream 724626 39734703 ~ 39750180 (+)
LOC110525927 smim15 other upstream 793075 39673964 ~ 39680031 (+)
G506281 LOC106585187 other downstream 70724 40544863 ~ 40547513 (+)
G506285 NA other downstream 91928 40566067 ~ 40566429 (+)
fbxl17 fbxl17 other downstream 94587 40568637 ~ 40886427 (+)
G507768 LOC105030512 other downstream 995412 41469551 ~ 41471408 (+)
G508559 dph7 other downstream 1655086 42129225 ~ 42131940 (+)

Expression


Co-expression Network