G514732 (LOC106585521)


Basic Information

Item Value
gene id G514732
gene name LOC106585521
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 47491488 ~ 47492043 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU583900
AGGATTGAGGAATAAACACCCGGACAGAGGATCTGTTATTGAGCTCTTGGAGAAGAAGGCTCTTAAGGCTGCATTCGGCCCAGGCAACAAAGATGAGATGGAGGACTGctacccaatcctcatctcattcATGCGCAATCATACTGATGAGCAATGGCAAGTGATCTATAAAGGATTTAAAAAACCTATGACAAAGGAACAGCTTGCAAAATTGTGCAAG

Function

NR:

description
uncharacterized protein LOC110526909

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU583900 True 220 lncRNA 0.44 3 47491488 47492043

Neighbor

gene id symbol gene type direction distance location
LOC110526909 LOC106585521 coding upstream 67269 47421241 ~ 47424219 (+)
LOC118964877 NA coding upstream 93062 47395367 ~ 47398426 (+)
LOC110526052 hic2 coding upstream 274054 47150900 ~ 47217434 (+)
si:dkey-88e18.2 il12b coding upstream 372477 47110812 ~ 47119011 (+)
LOC110526907 NA coding upstream 487136 46993596 ~ 47004352 (+)
LOC118964881 LOC106585521 coding downstream 21589 47425001 ~ 47519480 (+)
LOC118964880 LOC106585521 coding downstream 47278 47539321 ~ 47543002 (+)
LOC118964879 LOC106585521 coding downstream 179288 47671331 ~ 47675493 (+)
LOC118964888 LOC106585521 coding downstream 233588 47725631 ~ 48235995 (+)
LOC118964889 LOC106585521 coding downstream 461675 47953718 ~ 47955681 (+)
G514718 NA non-coding upstream 53828 47437338 ~ 47437660 (+)
G514709 NA non-coding upstream 68854 47422303 ~ 47422634 (+)
G514685 NA non-coding upstream 138319 47347637 ~ 47353169 (+)
G514684 NA non-coding upstream 138940 47347461 ~ 47352548 (+)
G514675 NA non-coding upstream 152161 47330427 ~ 47339327 (+)
G515037 NA non-coding downstream 51304 47543347 ~ 47543994 (+)
G515051 NA non-coding downstream 213468 47705511 ~ 47705885 (+)
G515056 NA non-coding downstream 217112 47709155 ~ 47709359 (+)
G515057 NA non-coding downstream 223995 47716038 ~ 47716868 (+)
G514662 LOC106597055 other upstream 162244 47303183 ~ 47329244 (+)
G514665 NA other upstream 171438 47306438 ~ 47320050 (+)
G514499 NA other upstream 468396 47022294 ~ 47023092 (+)
G514464 NA other upstream 563774 46926842 ~ 46927714 (+)
G513745 NA other upstream 590365 46900561 ~ 46901123 (+)
G515069 NA other downstream 457963 47950006 ~ 47952254 (+)
G515189 LOC100135962 other downstream 1059576 48532377 ~ 48587888 (+)
LOC110526072 LOC106587002 other downstream 1456574 48948617 ~ 49037542 (+)
edf1 edf1 other downstream 1691830 49183291 ~ 49187334 (+)

Expression


Co-expression Network