G515137 (LOC106585477)


Basic Information

Item Value
gene id G515137
gene name LOC106585477
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 48318887 ~ 48319224 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU584349
cttgagtactggtatccagattggagagacagagagctggtattgGTTGGCTCTCTCTGGGAACTCTACTGTGTTCGGTGCTGGGTAACTGGACCTCAATAGTTGAAACAGTTGCCTTTTCCAGGGTGTCTGAAGACTCCCGAAGAGAAGCATCCTTTGCCACACCTTCGTCTCGAGCGGCTAGAGTTAAAAGGTCCCTCAGCTTTGCTCGTATACGGCCATAGAGTGTGCCGGCTAGAGAGAAGGTTATCTTCTGTGAAGACCCTGttttgtggtcatttacaggaactggccaatcaactgcttcacatgtgtcttcaaatgatgctatcgtctcc

Function

NR:

description
uncharacterized protein LOC110515943 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU584349 True 338 lncRNA 0.49 1 48318887 48319224

Neighbor

gene id symbol gene type direction distance location
LOC110512253 LOC106585521 coding upstream 16467 48299720 ~ 48302420 (+)
LOC118964891 LOC106585521 coding upstream 41345 48272553 ~ 48277542 (+)
LOC118964885 LOC106585521 coding upstream 68938 48244976 ~ 48249949 (+)
LOC118964887 LOC106585521 coding upstream 279090 48037087 ~ 48039797 (+)
LOC110512140 LOC106585521 coding upstream 315458 47997906 ~ 48003429 (+)
LOC118936658 LOC106585521 coding downstream 8644 48327868 ~ 48331446 (+)
LOC110526080 LOC106585521 coding downstream 35389 48354613 ~ 48393007 (+)
LOC110514397 LOC106585521 coding downstream 38325 48357549 ~ 48358334 (+)
LOC118964893 LOC106585521 coding downstream 39629 48358853 ~ 48360349 (+)
cntrl cntrl coding downstream 100549 48419773 ~ 48528758 (+)
G515135 LOC106585477 non-coding upstream 543 48317730 ~ 48318344 (+)
G515132 NA non-coding upstream 3360 48315260 ~ 48315527 (+)
G515127 LOC106585477 non-coding upstream 28323 48290211 ~ 48290564 (+)
G515061 NA non-coding upstream 596043 47722434 ~ 47722844 (+)
G515057 NA non-coding upstream 602019 47716038 ~ 47716868 (+)
G515153 NA non-coding downstream 12443 48331667 ~ 48331992 (+)
G515189 LOC100135962 non-coding downstream 213153 48532377 ~ 48587888 (+)
G515190 c5 non-coding downstream 276294 48595518 ~ 48619629 (+)
G515262 NA non-coding downstream 280559 48599783 ~ 48602381 (+)
G515308 NA non-coding downstream 355660 48674884 ~ 48675558 (+)
G515069 NA other upstream 366633 47950006 ~ 47952254 (+)
LOC118964881 LOC106585521 other upstream 802177 47425001 ~ 47519480 (+)
G514662 LOC106597055 other upstream 989643 47303183 ~ 47329244 (+)
G514665 NA other upstream 998837 47306438 ~ 47320050 (+)
G514499 NA other upstream 1295795 47022294 ~ 47023092 (+)
LOC110526072 LOC106587002 other downstream 629393 48948617 ~ 49037542 (+)
edf1 edf1 other downstream 864649 49183291 ~ 49187334 (+)
LOC110526066 LOC106584148 other downstream 914355 49233579 ~ 49260632 (+)
G516011 NA other downstream 985901 49305125 ~ 49307140 (+)

Expression


Co-expression Network