G518181 (snx2)


Basic Information

Item Value
gene id G518181
gene name snx2
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 51337013 ~ 51345527 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU587765
AATTCTATCCAGCCTATTTGAGCACACGTATCATTAAAATGTCTGTTTGCTTGTTAGTGAGGTGCACTTTTCTCTTACCTCTTTGATTTCATCCTGAGCCTGCTGTAGCTTGTCAGGCTTGTTTGCGAACTGGAGTTTGGACTCAGCCTCACGCTTCTTCTGCAGCAAGAGCTGGGTGTCCTGCCACTTGGACCAAGTCTTCATCCGGTGGTCAAATACACCCTTGACTGCAGTGATGAGACGTACATAGTCCCCCAGCAGCTCGGAGAACAGGTAGAAATCAGCGTAAGCCTGGTCCTGGTGCAGCTGGTCGATCTTCTCCTCCACCTCGGCCAACTGCGACAGGGCCCGCGACAGAGCTGTGTGGTCCTCGGAGTTCCCAAGCATGGCTGCCGACTTGGCGAAGGATGCCGTGTTTACCGACAGCTCTGAAGATgacgagagaggagaaaggaagagaaagtGATCATGACATTGTTTAGAAAGAGAGCAGGTTCATAGGTGAAGAATTGCAAAGTGGTCCAATTTAAATGGT
>TU587766
CCCAGTAAGGAAGGAAAGGACCACCCCCCGAGCAGCACCTGGCTTGTGCCTCTACTTCTTTTCACTCACACAATCTTAGAATTCAAGTGGAAAGCCTCATTAATTCGTCTCATTATTCAAGTCCAAAAATCAGCCCTTACCGCATCCGATTCATTCATCTTGATTGTCATTTTGTTGACAGCGTCGGCAGCTTTGTTTACCATCCTCAATATTCCGGCCCCACTCAGCGCCTGGGTGCTAACCGCTCTCGGCAGCTCTGAACTCTCCAGGAACATCATGACATCCGGATCCTTCAGCAGGATGGGATGTTTCACTGTTCTCATCAGATACCTTTCTAAGGCCGATCTTCTCTTCTCAACAAATTCTGCAGAAGACAAATCCTCTTTCCCAACTTTGACCTTAGTCATTCCCACAATGCTTTTCTCTGGAGCGGGAGGGACTATGTATCCTATATGCAGGTACCTGGAGGCTAGTTTGCTGTGCAAGCCTAGAAAGTCACTAAACCTCCTCCTTACAGTGGTTTCATTCTTGCTGAAAATGGTCATAGAGGTCTAGAAGAAGGAGGAAGAAGACATTATTTGTTCTTTTTTCATTATaagttattttttaaacttatCACAAATAATAGAACTtattatgtacagtgcattcagaaagtattcagacccattgactttttgtcactttacagccttattctaaaatggatgaaatagttttttccccctacacacacacacacaataccctataatgacaaagcaaaaacaggtttagacatttttgcacatttataaaaaattaaaaataaaaaagaaatattacagttacataagtattcagactcttatCTCAGTACttcattgaagcacctttggcagcgattacagcatcaagtatTTTtgggctacaagcttggcacacctgtatttggggagtttgtcccattgttctctgcagatcctctcaagctgtcaggttggatggggagcattgctgcacaactattttcaggtcactccagtgatgtttgatcgggttcaagtccaggctctggctgagtcactcaaggacattcagagacttgtcctgaagccactacagagttgtcttggctgtgtgcttagggtcgttgtcttgttggaaggtgaacctttgcctcag

Function

symbol description
snx2 Predicted to enable phosphatidylinositol binding activity. Predicted to act upstream of or within endocytosis and intracellular protein transport. Predicted to be located in cell projection; endosome; and membrane. Predicted to be part of retromer complex. Orthologous to human SNX2 (sorting nexin 2).

NR:

description
sorting nexin-2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU587765 False 535 lncRNA 0.50 2 51337013 51337900
TU587766 True 1164 lncRNA 0.42 4 51340605 51345527

Neighbor

gene id symbol gene type direction distance location
LOC110526137 cep120 coding upstream 111749 51159434 ~ 51225264 (+)
znf608 znf608 coding upstream 208869 51113986 ~ 51128144 (+)
LOC110526132 LOC106587036 coding upstream 319885 50991573 ~ 51017128 (+)
LOC110526128 NA coding upstream 414907 50911697 ~ 50922106 (+)
LOC110526127 LOC106586990 coding upstream 435919 50899096 ~ 50901094 (+)
LOC118964909 NA coding downstream 367263 51712790 ~ 51718231 (+)
homer1b homer1 coding downstream 537756 51883283 ~ 52006875 (+)
LOC110493840 LOC106605670 coding downstream 932167 52277694 ~ 52279409 (+)
otpb LOC106587051 coding downstream 1039615 52385142 ~ 52390468 (+)
mapk8ip1b LOC106587053 coding downstream 1178829 52524356 ~ 52645645 (+)
G518186 NA non-coding upstream 35475 51301268 ~ 51301538 (+)
G518185 NA non-coding upstream 36323 51300395 ~ 51300690 (+)
G518182 NA non-coding upstream 42613 51294188 ~ 51294400 (+)
G518133 NA non-coding upstream 105191 51231525 ~ 51231822 (+)
G518132 NA non-coding upstream 106487 51229996 ~ 51230526 (+)
G518365 NA non-coding downstream 217803 51563330 ~ 51566559 (+)
G518354 NA non-coding downstream 261822 51607349 ~ 51625607 (+)
G518435 NA non-coding downstream 312806 51658333 ~ 51663288 (+)
G518452 NA non-coding downstream 342613 51688140 ~ 51688536 (+)
G518773 NA non-coding downstream 390233 51735760 ~ 51738373 (+)
LOC118964907 NA other upstream 601777 50719208 ~ 50743120 (+)
barhl1a barhl1 other upstream 1585264 49748788 ~ 49753260 (+)
LOC118964898 LOC106585477 other upstream 1949801 49347319 ~ 49387212 (+)
G516011 NA other upstream 2029873 49305125 ~ 49307140 (+)
G519603 NA other downstream 1306413 52651940 ~ 52655297 (+)
G521552 prmt3 other downstream 2580415 53925942 ~ 53955130 (+)
G521914 NA other downstream 2924398 54269925 ~ 54270259 (+)
LOC110526161 LOC106587065 other downstream 3534172 54793125 ~ 54954478 (+)

Expression


Co-expression Network