G518773


Basic Information

Item Value
gene id G518773
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 51735760 ~ 51738373 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU588401
ctcCTTGTGGGTCCTGTCTAAatgcagcctgtgtgtgtgctacctcCTTGTGGGTCTTCCATACAGTAGACCTGGAAGCAGTCTATGATGTCTCCAGGGTTGACCCTCCAGTAAACAGTCACACTGGTGCTGCTGGCTGAAGCACACTCCTGAGGCTGCAGAGACGGCTTTTGAGGAActaagacacacagagagacacacagggagagggggcaGATAGATAagagttagagagaaagagagagtgtttgTTTCTGTTCTATAGAGACCCACCTGGGATTCCCTTGCgtcgtgtgtgtgtatttgctgcATTGCCCTTGGCGTAGTCTTCAAACACTAGTAGTCCCCGAGGACCCAGCTCCAAAGACATGGCTGACTGTAGTGCTTCAGTTAACCTTGGAGAGGCAAATAACAGTTCTGAGAGTTTTTGTGTATATGTGGCAACGGTCATCGAAACAATTCTAATTAATGCAACAGTTGGACAGTGGATGAAGATACTCAAAACTTTTAGCATTTTTATATTCCGTTAGATATTGACTGAATTATAGCACATAAAACATTTACTGGGACAGGGATTTTGGTGGGAATTCATGTATTCAATTTTGCAAATGTCACCTTTTTTTATTAGAATGCactcatacagtatatacatttttcTTATTGTACTTATTGTATCAggtatttattacattttttgtgttaaaataaagaaaatgtgcCTCATTTGCATAAATCCACCGGGTATACATGTATGAATAAATTAACATAACGGGGTGTAACAGGACTGCAACCACTAAACACttactctgtctaccctacctacctgcactcacctgcactGTTTAGACTACCTCATGAATTACTGTTGGTGTCACAGTctattgtaaaataaaataaaatgttattggtcacatacacatggttagcagatgttattgtgagtgcaGCAAAATGCAtgtacttctagttccgacagtgcagtaacaaGTGTGTCAATAGCAGGATACCTTCAGATAATAGCAAGATACCCTCAGACACtcagtataccaaacattaggaacaccttcctaatatagaGCTGCAATCCCCCTccctttgccttcagaacagcctcaattcgtcagggcatggactctacaaggtgtcgaaagcattccacaggaaggctggcccatgttgactccaatgcttcccacagttgtgttacgTTGCCTGGAtatcctttggttggtggaccattcttgatacacacatgaaactgttgagcgtgaaaaacccagcagcattgcagttcttgacacaaaccggtgcgcctggcacctactaccataccctgttcaaaggcacttaaatattttgcattacccattcaccctctgaatggcacacatatacaatccatgtctcaattgtcaaggcttaaaaatccttctttaaactgtctcctccccttcatctacattgattgaaatggatgtaacaagtgacatcaataagggatcatagctttcacctggtcagtcagtctatgtcatgaaaagagcaggagttcttaatgttttgtatactcagtgtatattacacCTATCTAAACATACATGTTTGAGAGATCAGACATATCACTATAATCCGAGTGTTAATTTCTTTCATTTCAGCGTatctaatttgtaaaaatgtcaactGTATTAACACCCATCAAAATAAAGTTGTCTTTCGTCTCTGTCTTGTTATGTAAGTGTCGAGACGGTGTGTAGAATCCCCAACGAAGGTTTTGCATTTTTATAGATTCTACGGAAAGACAATGTATTACATTGAGCACATTTCAGCCATTACCGGGgtgtttgacaggtcattacaaacATTTCCTCTGTCGTAACATTAACGGGAAAATAAGACGGGCACAAGTGAGAGTCTGAAAGAGTCACAGGAGTAAAATGAAAGAAATCAATCCAGAGAGATTTAAGTGACAAGTGGATTTTgcacccctcaaacacaggaaatagattgCTGCCAAAGACCTCAGGTGGGCAGGGCATGCACATTGCTAGTGTGTGTGAGACCCATTGCCAgagacatacaggtaactgccaaaataaaggaaacaccaacataaagtaatcttaatagggcgttgaacagcttcaatgcatc

Function

NR:

description
cardiomyopathy-associated protein 5-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU588401 True 2151 lncRNA 0.41 2 51735760 51738373

Neighbor

gene id symbol gene type direction distance location
LOC118964909 NA coding upstream 17529 51712790 ~ 51718231 (+)
LOC110526137 cep120 coding upstream 510496 51159434 ~ 51225264 (+)
znf608 znf608 coding upstream 607616 51113986 ~ 51128144 (+)
LOC110526132 LOC106587036 coding upstream 718632 50991573 ~ 51017128 (+)
LOC110526128 NA coding upstream 813654 50911697 ~ 50922106 (+)
homer1b homer1 coding downstream 144910 51883283 ~ 52006875 (+)
LOC110493840 LOC106605670 coding downstream 539321 52277694 ~ 52279409 (+)
otpb LOC106587051 coding downstream 646769 52385142 ~ 52390468 (+)
mapk8ip1b LOC106587053 coding downstream 785983 52524356 ~ 52645645 (+)
LOC110502468 LOC106605670 coding downstream 816632 52555005 ~ 52558912 (+)
G518452 NA non-coding upstream 47224 51688140 ~ 51688536 (+)
G518435 NA non-coding upstream 72472 51658333 ~ 51663288 (+)
G518354 NA non-coding upstream 110153 51607349 ~ 51625607 (+)
G518365 NA non-coding upstream 169201 51563330 ~ 51566559 (+)
G518181 snx2 non-coding upstream 390233 51337013 ~ 51345527 (+)
G518797 NA non-coding downstream 106828 51845201 ~ 51845492 (+)
G518799 NA non-coding downstream 107273 51845646 ~ 51845924 (+)
G518795 NA non-coding downstream 107940 51846313 ~ 51846872 (+)
G518848 NA non-coding downstream 134668 51873041 ~ 51873363 (+)
G519109 NA non-coding downstream 284985 52023358 ~ 52023625 (+)
LOC118964907 NA other upstream 1000524 50719208 ~ 50743120 (+)
barhl1a barhl1 other upstream 1984011 49748788 ~ 49753260 (+)
LOC118964898 LOC106585477 other upstream 2348548 49347319 ~ 49387212 (+)
G516011 NA other upstream 2428620 49305125 ~ 49307140 (+)
G519603 NA other downstream 913567 52651940 ~ 52655297 (+)
G521552 prmt3 other downstream 2187569 53925942 ~ 53955130 (+)
G521914 NA other downstream 2531552 54269925 ~ 54270259 (+)
LOC110526161 LOC106587065 other downstream 3141326 54793125 ~ 54954478 (+)

Expression


Co-expression Network