G523490


Basic Information

Item Value
gene id G523490
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 55401332 ~ 55454861 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU593361
cgatcactgcctcattgcctgcatctgtaatgggtcagcggtcaaacgacctccactcatcattgtcaaactctccctaaaacacttcagcgtgcaggcctttctaatcgacttggccggggtatcctggaaggacattgaccttatcccgtcagtagaggatgcctggttattttttttaaatgataaatAAACACCAACTCTCGCACTTgtcttttcctactagcactgactttgcggaggaaaaatgtacttacaaatgactgaaatgtggttgtctcaccgaaccatcttaagatgaatgcaccgACTAAGTCGTTCTGGTTAAGTGTCCgctaaataactcaaatgtaaaaaaaaatgtaaaaagcaatGCCATTCTCACACACCAGCTGGTGGTTGCAGATAGCCAGGTCTGCCACCTTGCCCCAGCCCACTGGCACCACATCAAAGCAGCGGTTGGGCTCCCAGCCATACACACGGAGAGAGTCCACAGCTCCACTATACAGACAGCAGCCATCCAGGTTAAAGGCCAGACACCTGGAGAGAgaaatgtttatatacagtatagtgtgttAGTTGCATCTGAACTTCTAATATCGTGGTGTCCCGCCAACCACACTTGTTAATAGTGACGGTAGCCC

Function

NR:

description
katanin p80 WD40 repeat-containing subunit B1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU593361 True 644 lncRNA 0.46 2 55401332 55454861

Neighbor

gene id symbol gene type direction distance location
LOC110526930 LOC106561912 coding upstream 36590 55351729 ~ 55364742 (+)
LOC110526162 NA coding upstream 265710 55127056 ~ 55135622 (+)
LOC118965082 NA coding upstream 333089 55066200 ~ 55068243 (+)
LOC110526161 LOC106587065 coding upstream 446854 54793125 ~ 54954478 (+)
brsk2b LOC106587064 coding upstream 762078 54452454 ~ 54639254 (+)
LOC110526167 LOC106587078 coding downstream 108578 55563439 ~ 55568167 (+)
LOC110526169 LOC106587076 coding downstream 449203 55904064 ~ 55916081 (+)
LOC110526172 LOC106561172 coding downstream 510361 55965222 ~ 55968091 (+)
LOC110526171 LOC106587080 coding downstream 516579 55971440 ~ 55980904 (+)
LOC110526173 LOC106587080 coding downstream 527409 55982270 ~ 55990919 (+)
G523464 NA non-coding upstream 57870 55343237 ~ 55343462 (+)
G523403 NA non-coding upstream 68317 55304241 ~ 55333015 (+)
G523235 NA non-coding upstream 143963 55251949 ~ 55257369 (+)
G523122 NA non-coding upstream 330330 55070659 ~ 55071002 (+)
G523520 NA non-coding downstream 16894 55471755 ~ 55472673 (+)
G523549 NA non-coding downstream 51419 55506280 ~ 55506566 (+)
G523553 NA non-coding downstream 56104 55510965 ~ 55511275 (+)
G523660 NA non-coding downstream 58355 55513216 ~ 55513437 (+)
G523689 NA non-coding downstream 80921 55535782 ~ 55536838 (+)
G521914 NA other upstream 1131073 54269925 ~ 54270259 (+)
G521552 prmt3 other upstream 1446202 53925942 ~ 53955130 (+)
G519603 NA other upstream 2746035 52651940 ~ 52655297 (+)
LOC110493840 LOC106605670 other upstream 3122334 52277694 ~ 52279409 (+)
G523529 NA other downstream 29388 55484249 ~ 55484607 (+)
LOC110526175 LOC106587084 other downstream 655418 56020625 ~ 56120747 (+)
G525645 NA other downstream 2121223 57576084 ~ 57581070 (+)

Expression


Co-expression Network