G523520


Basic Information

Item Value
gene id G523520
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 55471755 ~ 55472673 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU593396
ctggactatgcaggcgaaccggagaaaccgagcgcaaggctggtgccatgtaaaccggcccaaggagacgcactggggaccagctgcgtagagccggcttcatggcattaggctcgacgctcaatctagcccggccgacacgcggagctggaatataccgcaccgggctatgcacccgcactggagacaccgtgcgcaccactgcataacacggtgcctgtccggtctctctagccccccggtaagcacagggagtctgcccaggtctcctacctggcatagccatactccctgttagcccccccccaagaaatttttggggctgcctctcaggcttccatccgctacgtcgtgctgcctcctcatatctgcgcctctccgctttcgccgcctccagttcttccttggggcggcgatattctccaggctgagcccagggtcctttaccgtccagttcttcctcccatgtccatttctccaggtggtgcagcctctcccactgcagctgctcctgctgcttcttctcctgctgcacctttgggcggctacactcccctggtttagcccagggtcctctcccgtcgaggatttcctcccatgtccagaaatccttattgcgcgtctcctcgcgctgctcctgcctgttgacacgctgcttggtccgttggtggtgggtgattctgtaacggttttctttatgagaaggagagtcggaccaaaatgcagcgtgtagattgcgatccatgttttaatgaacaaacgtaaaacacgaatcaatgcaaacactacaaaataaagaacgtgatcaacgtaacgaaaacctaaaacagcctatctggtgaaaaacacatagacaggaacaatcacccacaaacacacagtgaaccccaggctacctaaatatggttcccaatcagag

Function

NR:

description
PREDICTED: uncharacterized protein LOC106595571

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU593396 True 919 lncRNA 0.55 1 55471755 55472673

Neighbor

gene id symbol gene type direction distance location
LOC110526163 LOC106587071 coding upstream 23619 55375096 ~ 55448136 (+)
LOC110526930 LOC106561912 coding upstream 107013 55351729 ~ 55364742 (+)
LOC110526162 NA coding upstream 336133 55127056 ~ 55135622 (+)
LOC118965082 NA coding upstream 403512 55066200 ~ 55068243 (+)
LOC110526161 LOC106587065 coding upstream 517277 54793125 ~ 54954478 (+)
LOC110526167 LOC106587078 coding downstream 90766 55563439 ~ 55568167 (+)
LOC110526169 LOC106587076 coding downstream 431391 55904064 ~ 55916081 (+)
LOC110526172 LOC106561172 coding downstream 492549 55965222 ~ 55968091 (+)
LOC110526171 LOC106587080 coding downstream 498767 55971440 ~ 55980904 (+)
LOC110526173 LOC106587080 coding downstream 509597 55982270 ~ 55990919 (+)
G523490 NA non-coding upstream 16894 55401332 ~ 55454861 (+)
G523508 NA non-coding upstream 39622 55431793 ~ 55432133 (+)
G523464 NA non-coding upstream 128293 55343237 ~ 55343462 (+)
G523403 NA non-coding upstream 138740 55304241 ~ 55333015 (+)
G523235 NA non-coding upstream 214386 55251949 ~ 55257369 (+)
G523549 NA non-coding downstream 33607 55506280 ~ 55506566 (+)
G523553 NA non-coding downstream 38292 55510965 ~ 55511275 (+)
G523660 NA non-coding downstream 40543 55513216 ~ 55513437 (+)
G523689 NA non-coding downstream 63109 55535782 ~ 55536838 (+)
G523696 NA non-coding downstream 70727 55543400 ~ 55543667 (+)
G521914 NA other upstream 1201496 54269925 ~ 54270259 (+)
G521552 prmt3 other upstream 1516625 53925942 ~ 53955130 (+)
G519603 NA other upstream 2816458 52651940 ~ 52655297 (+)
LOC110493840 LOC106605670 other upstream 3192757 52277694 ~ 52279409 (+)
G523529 NA other downstream 11576 55484249 ~ 55484607 (+)
LOC110526175 LOC106587084 other downstream 637606 56020625 ~ 56120747 (+)
G525645 NA other downstream 2103411 57576084 ~ 57581070 (+)

Expression


Co-expression Network