XLOC_024404 (pthlhb)


Basic Information

Item Value
gene id XLOC_024404
gene name pthlhb
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007136.7
NCBI id CM002909.2
chromosome length 37502051
location 3257932 ~ 3262318 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00048252
GTTTAGTTGTCCGGCAGTATGTTAAGGCACTGGGGCTTTGCTGTGTTCCTGCTAACAATCCCGATACCCATCCAGTCCAGAGCCACTAATGCTCCCAGCAGCAGACAACGGCGTTCAGTCGGTCACGCTCAGATGATGCACGACAGGAGCCGCTCTCTGCATGACCGGAAGAGGCGCATGTGGCTCCAGGATCTGCTTGAGCAGGTGCACACGGCTCAGGTGTGGGACTCACCCAATCAGAGCGAAgggagtgtccaaactctgtcctggccCCGCCCTAAACACACCGGCAGCACCAAAAACATCCCCTTGGGCTATCAAATGGAGAGTATTGGGACGCGAGACGACCTGCCGCAGGAGACCAGCAAGAGCCTGACATATGAAGAGCAGCCACTGAAAGCGGCCATGAAGAGGAAGAGTAAGATGTGTTTGGGCCGATGGAGAGAGCGGGACAGGAGGAGAGACCGAGCGTGTGCCTTCCAAATGCAAATGCACATGAGAGAGTGATAAAAGGGACGGACGATTGCATTGACGGCCATTTGAAGAGACGGGAGCATTAAATAAACTGAGCAGACTTT

Function

symbol description
pthlhb Predicted to enable hormone activity and peptide hormone receptor binding activity. Acts upstream of or within embryonic viscerocranium morphogenesis. Predicted to be located in extracellular region. Is expressed in several structures, including head; mesenchymal cell; otic vesicle; pancreas; and thymus. Human ortholog(s) of this gene implicated in brachydactyly type E2. Orthologous to human PTHLH (parathyroid hormone like hormone).

GO:

id name namespace
GO:0007189 adenylate cyclase-activating G protein-coupled receptor signaling pathway biological_process
GO:0032330 regulation of chondrocyte differentiation biological_process
GO:0002076 osteoblast development biological_process
GO:0030282 bone mineralization biological_process
GO:0048701 embryonic cranial skeleton morphogenesis biological_process
GO:0048703 embryonic viscerocranium morphogenesis biological_process
GO:0005576 extracellular region cellular_component
GO:0051428 peptide hormone receptor binding molecular_function
GO:0005179 hormone activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-110411-206 Predicted to enable hormone activity and peptide hormone receptor binding activity. Acts upstream of or within embryonic viscerocranium morphogenesis. Predicted to be located in extracellular region. Is expressed in several structures, including head; mesenchymal cell; otic vesicle; pancreas; and thymus. Human ortholog(s) of this gene implicated in brachydactyly type E2. Orthologous to human PTHLH (parathyroid hormone like hormone).

Ensembl:

ensembl_id ENSDARG00000071070

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00048252 True 578 mRNA 0.55 2 3257932 3262318

Neighbor

gene id symbol gene type direction distance location
XLOC_024403 cib1 coding downstream 27745 3224085 ~ 3230187 (-)
XLOC_024402 gtf2h1 coding downstream 40817 3196855 ~ 3217115 (-)
XLOC_024401 hps5 coding downstream 65527 3148431 ~ 3192405 (-)
XLOC_024400 epx coding downstream 118127 3119810 ~ 3139805 (-)
XLOC_024399 best1 coding downstream 170376 3069671 ~ 3087556 (-)
XLOC_024405 NA coding upstream 40206 3302524 ~ 3306305 (-)
XLOC_024406 golt1bb coding upstream 79456 3341774 ~ 3347418 (-)
XLOC_024407 NA coding upstream 115505 3377823 ~ 3393705 (-)
XLOC_024408 hbp1 coding upstream 187641 3449959 ~ 3470910 (-)
XLOC_024409 PRKAR2B coding upstream 213066 3475384 ~ 3503458 (-)
XLOC_024395 BX957346.3 non-coding downstream 571950 2672491 ~ 2685982 (-)
XLOC_024394 BX957346.1 non-coding downstream 619115 2546343 ~ 2638817 (-)
XLOC_024393 NA non-coding downstream 772884 2483112 ~ 2485048 (-)
XLOC_024391 NA non-coding downstream 944899 2309414 ~ 2313033 (-)
XLOC_024390 NA non-coding downstream 958183 2275525 ~ 2299749 (-)
XLOC_024410 NA non-coding upstream 268149 3530467 ~ 3531168 (-)
XLOC_024415 NA non-coding upstream 483846 3746164 ~ 3747949 (-)
XLOC_024421 NA non-coding upstream 618404 3880722 ~ 3884430 (-)

Expression


Co-expression Network