XLOC_024431 (pidd1)


Basic Information

Item Value
gene id XLOC_024431
gene name pidd1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007136.7
NCBI id CM002909.2
chromosome length 37502051
location 4507288 ~ 4530085 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00048291
ATGTGATGCCACTCTAGTGATGGAGAGATGAAGACGGAGGTGCCAGATTCATCTCTCCTTCATTCTCACTATTTGGGGCAGGGGCTGATGGGAAAAAAGGGGGAATAGATGGAGAGAGAAGAGAAAAAACAGACTGAGAGGAAAGAGTGGCCGGCCCCACCTGATGAGGAAGGAGATGCTGATAGTTTTACAAATAAAAGAAGGGCGATGCTGATGGAGACGGCTGCTGGACCAGATTTTTTCGGGAAGCTGGAGACGGAGGATAGTCCACCGTTAGGAGTCTCTCTTTGCTCTGAGCACACAGACACCTGGGCTCCGTCCATCGTGTCGTCCTCTTCCTCCTCTCTGccctgtctctctcctcctcttcctccgtCGGTGGGTCTGGACGGTGTGCTGGTGGAGGAGCGGCTGGTGCTGGACGTGTATCGGGGTGGAGCAGAGGTGCTTCCGGTGTTCTGGGAGTTTGTTCAGGAGCGGATGAGAGGCCTGCAGTATCTCAGACTGGGCTCAGAGGACGAGGGGGCACTAGAGAGAGCATTGAGGGTCCTGCCCCGACTGACACAACTGCGCTCTCTGGCCATCAGAGGTTGTCGTTTTCATGATCCTCAGGGCGATCCTCTGCCCGGTCTCCTCTCCTCTCTGCCAGACTCTGTCTCTTCTCTGTCTCTCCTCGTCCACCTCGATCTCTCCTTTAATCGTTTCTCTTCTCTTCCTTCATGTCTTCTGTCTTTCTCTCATCTCTCTGAGCTCCTGCTGTGCCACAACAATCTGACGACTCTACCGGAGGGCATTGGAGCTCTGGCATCCCTGCGGCGGGTGAGTCTGCTTGGGAACCGTCTAGTGGATCTGCCCCAGGATCTGGGCCTCCTCTGCGGGCTGGAGGAGCTGGACGTGTCCTTTAACCTGCTGGAGAAACTTCCAGATGAACTGGGCCAACTGCAGAACTTACAGCGGCTGGAGCTGTCAAATAACAGATTAAGATCTCTGCCAGAGACGCTGGGGTCTCTGCGCTCTCTGAGGCAGCTGCTAATCCAGAGTAATGATCTGAGGAGTGTTCCTGACTGTTTACACTCACTTCCGATGCTTGACAAGCTGGATGTGAGGAACAACCCGCTGGGGCGCCCGCCAACACCACCTCCGCTTGCCCAACTCACCCCAGttGTGGAAGATTCTGAAATCCCAGAGCTACATCTTGGATTCAATCAACACAGTTTTCAAGTGTCTCCTGCTGGCTGTCACGTGTTTCTTCCTGGAGGGGCGGAGCTCTTGTTTCCAAGGCAATGTGTAGGTGTGGTCACTCAGCTTCAGTGGGCAGAGAAGAGGCCGGACAGGAAGTGGGTGTGGCTAGAGGAGCATGATGTGCTGTTGAGTCGCCAGCTGGAGCTCCGCCCACACGGAGCCACATTTGAGAAGCTGGTTGGGGTGTGTATTCCCTATCGTAAAACACGGAAAGGTGACGTGGTGGTTCGCAGGTTTGATGGTCAGTCTTGGACGACACTGACCACCATGACCAGAAGAGGAAGTGACAAACACAGCTGCAGGCCTGGAGGACGTCCTGCACggCTGGCCTGCTGCAGTGTGTCTCAGTTCTCCTGGTTTGTGGCCGTGTGTTGTCCATTCCTGGACAGTTGCAGTGTGTCTCCAGAGGGGGCGCTGCTTGTCTCTCAATGCGACCCGGGGATCAAACTCAGTTTCCCTCCAAACTGTACAGCGGAGACGCGCACCGTCACACTGCAGGTTCTGCAGGTGGCTCTGTCTGAGGTGCAGGATCTGGCTGGAGACCCTCATGCCAGTGCTGGTCCACTGCTGCGTCTCTCtcaaactcccagcatgcacttccttcagccaatcagagtgcaaGTTCCTCTCCCACCTGGAGTGACAGgacaCATGTTGGACCTGTCCCGTCTGCACCTGATGCATGGCGACCCCACGGCCCACACCTGGACAGACGTCACCGCTCAAGTGTCCCTGTACGTCACACACATCTACGCCGTCTTCTTCATCACACACTTCTCATGgtacTGGTTGTGGTACACCACTCACAGGTGTGTTAGCGGAGTGGTCAGAAAGATGTATCGCCGATTGAAACAGTTTCGGGTTCGATTCCTGGCGCTACAGAGGAAAAACGACCCAGAGCAGATTCTGCTGCAGTGCCTGCCATCTGACaagGCTGAAAGCCGGCTGGAGTCTCTGGCGGATCAGTATGAAGGCCCTCAGCCGTCTGAGCTGTGTGTCCTGCTGGAGGGAGAGCAGTTTTTCGCTGGCTTTGAGAGAGGCATTGACATCAACTCAGACCGTCCAGACTGTAAAGATGGCAGACTCTCGTTCACCTTTTACTCTCACCTGAAGAACATTAAAGAGGTCTACGTGTGCGCGACCCACCCGGTCCAGACCACTGTTAGAGGACAGGTGTCTTTTTACCGGGGTGAAGTGCCTAGTGATCTTCCAGAGGAAGTGGCCAGAAAAAGAAAAGGTCACGATGACCAGTGGATGGCGACACTTCCTCTGCGGATTCCTAACTCAGAGATTGACGGGAGCATCTCAGGTGAGCTGAATCTGGGCGACCCAGAAAGCGGATACCTGACCCAGACCAACCTGCTGTCCATCTCCTTGCGCATCAACCAGGAGTGGCAAAACATCGGCATCAACCTGGGCATGAGCTACGAGCAGCTGGAGCGCATCCGCCACCAGCACAGGGATAACTTCGGGGCGCAGGTACTGGCGATGCTCTTTCATTGGGCTAGAGGGCAGCAGGGGGCGGGGCCTGGGGCGGTGCAGCGGCTAATGACAGCGCTGGTGGACAGTGGTAGGCGGGACTTGGCAGAGGAAGTAGAGGACATAGTGACTCTGGGGAAGAGGAAGTATGAAGAATCACTAAAGAGAGTCGGGCTGGAGACACCGGTTACATCTACAGAGCCTCAGTCcagctgagacacacacacaacatac
>TCONS_00048292
ATGCAGTGTACATTCAGTTATGCTGGATTCATCGTAACTCTTCTCAGTTTTCAAGTGTCTCCTGCTGGCTGTCACGTGTTTCTTCCTGGAGGGGCGGAGCTCTTGTTTCCAAGGCAATGTGTAGGTGTGGTCACTCAGCTTCAGTGGGCAGAGAAGAGGCCGGACAGGAAGTGGGTGTGGCTAGAGGAGCATGATGTGCTGTTGAGTCGCCAGCTGGAGCTCCGCCCACACGGAGCCACATTTGAGAAGCTGGTTGGGGTGTGTATTCCCTATCGTAAAACACGGAAAGGTGACGTGGTGGTTCGCAGGTTTGATGGTCAGTCTTGGACGACACTGACCACCATGACCAGAAGAGGAAGTGACAAACACAGCTGCAGGCCTGGAGGACGTCCTGCACggCTGGCCTGCTGCAGTGTGTCTCAGTTCTCCTGGTTTGTGGCCGTGTGTTGTCCATTCCTGGACAGTTGCAGTGTGTCTCCAGAGGGGGCGCTGCTTGTCTCTCAATGCGACCCGGGGATCAAACTCAGTTTCCCTCCAAACTGTACAGCGGAGACGCGCACCGTCACACTGCAGGTTCTGCAGGTGGCTCTGTCTGAGGTGCAGGATCTGGCTGGAGACCCTCATGCCAGTGCTGGTCCACTGCTGCGTCTCTCtcaaactcccagcatgcacttccttcagccaatcagagtgcaaGTTCCTCTCCCACCTGGAGTGACAGgacaCATGTTGGACCTGTCCCGTCTGCACCTGATGCATGGCGACCCCACGGCCCACACCTGGACAGACGTCACCGCTCAAGTGTCCCTGTACGTCACACACATCTACGCCGTCTTCTTCATCACACACTTCTCATGgtacTGGTTGTGGTACACCACTCACAGGTGTGTTAGCGGAGTGGTCAGAAAGATGTATCGCCGATTGAAACAGTTTCGGGTTCGATTCCTGGCGCTACAGAGGAAAAACGACCCAGAGCAGATTCTGCTGCAGTGCCTGCCATCTGACaagGCTGAAAGCCGGCTGGAGTCTCTGGCGGATCAGTATGAAGGCCCTCAGCCGTCTGAGCTGTGTGTCCTGCTGGAGGGAGAGCAGTTTTTCGCTGGCTTTGAGAGAGGCATTGACATCAACTCAGACCGTCCAGACTGTAAAGATGGCAGACTCTCGTTCACCTTTTACTCTCACCTGAAGAACATTAAAGAGGTCTACGTGTGCGCGACCCACCCGGTCCAGACCACTGTTAGAGGACAGGTGTCTTTTTACCGGGGTGAAGTGCCTAGTGATCTTCCAGAGGAAGTGGCCAGAAAAAGAAAAGGTCACGATGACCAGTGGATGGCGACACTTCCTCTGCGGATTCCTAACTCAGAGATTGACGGGAGCATCTCAGGTGAGCTGAATCTGGGCGACCCAGAAAGCGGATACCTGACCCAGACCAACCTGCTGTCCATCTCCTTGCGCATCAACCAGGAGTGGCAAAACATCGGCATCAACCTGGGCATGAGCTACGAGCAGCTGGAGCGCATCCGCCACCAGCACAGGGATAACTTCGGGGCGCAGGTACTGGCGATGCTCTTTCATTGGGCTAGAGGGCAGCAGGGGGCGGGGCCTGGGGCGGTGCAGCGGCTAATGACAGCGCTGGTGGACAGTGGTAGGCGGGACTTGGCAGAGGAAGTAGAGGACATAGTGACTCTGGGGAAGAGGAAGTATGAAGAATCACTAAAGAGAGTCGGGCTGGAGACACCGGTTACATCTACAGAGCCTCAGTCcagctga

Function

symbol description
pidd1 Predicted to act upstream of or within apoptotic process; cellular response to DNA damage stimulus; and signal transduction. Orthologous to human PIDD1 (p53-induced death domain protein 1).

GO:

id name namespace
GO:0007165 signal transduction biological_process

KEGG: NA

ZFIN:

id description
ZDB-GENE-081104-353 Predicted to act upstream of or within apoptotic process; cellular response to DNA damage stimulus; and signal transduction. Orthologous to human PIDD1 (p53-induced death domain protein 1).

Ensembl:

ensembl_id ENSDARG00000074626

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00048291 False 2955 mRNA 0.55 15 4507288 4530085
TCONS_00048292 True 1770 mRNA 0.55 11 4507306 4525081

Neighbor

gene id symbol gene type direction distance location
XLOC_024430 slc25a22a coding downstream 24782 4460039 ~ 4482506 (-)
XLOC_024429 FO907094.1 coding downstream 181557 4325616 ~ 4325731 (-)
XLOC_024428 syt7a coding downstream 193589 4231238 ~ 4313699 (-)
XLOC_024427 NA coding downstream 311945 4194792 ~ 4195343 (-)
XLOC_024426 ppp1r32 coding downstream 314651 4180301 ~ 4192637 (-)
XLOC_024432 NA coding upstream 40143 4570228 ~ 4578464 (-)
XLOC_024433 drd4a coding upstream 177088 4707173 ~ 4733221 (-)
XLOC_024434 cyp19a1b coding upstream 360682 4890767 ~ 4904432 (-)
XLOC_024435 NA coding upstream 400280 4930365 ~ 4931600 (-)
XLOC_024436 shisal1b coding upstream 567977 5098062 ~ 5189989 (-)
XLOC_024425 NA non-coding downstream 335531 4168932 ~ 4171757 (-)
XLOC_024421 NA non-coding downstream 622858 3880722 ~ 3884430 (-)
XLOC_024415 NA non-coding downstream 759339 3746164 ~ 3747949 (-)
XLOC_024437 NA non-coding upstream 766347 5296432 ~ 5300492 (-)
XLOC_024438 CABZ01039859.2 non-coding upstream 810877 5340962 ~ 5341102 (-)

Expression


Co-expression Network