XLOC_024440 (AP3B2)


Basic Information

Item Value
gene id XLOC_024440
gene name AP3B2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007136.7
NCBI id CM002909.2
chromosome length 37502051
location 5702094 ~ 5740373 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00048300
ATGCTGGACAGTAATAAAGACTCCCTGAAGCTGGAGGCCATGAAACGCATCGTAGCGATGATCGCACGTGGTAAAAATGCCTCGGATCTTTTCCCTGCAGTGGTGAAGAACGTGGCCTGTAAGAACATCGAGGTGAAGAAGCTGGTGTATGTGTATCTGGTGCGCTACGCTGAAGAGCAGCAGGATCTCGCTCTGCTCTCCATTTCTACCTTCCAGAGAGGATTGAAGGACCCGAACCAGCTGATCCGAGCGAGCGCTCTGCGTGTGCTGTCCAGCATCAGAGTGACCATCATCGTCCCCATCATGATGCTGGCCATCAAAGAGGCGGCGTCAGACATGTCTCCATACGTCCGCAAGACCGCAGCACATGCCATCCCAAAActacacagTCTGGACCCAGACCAGAAAGATCAGCTGATTGAAGTGATCGAGAAGCTGCTGGCTGATAAAACCACActggTGGCAGGCAGTGTGGTGATGGCGTTTGAGGAAGTCTGTCCTGACCGCATTGACCTGATCCACAAGAACTACCGTAAGCTGTGTAACTTGCTGATCGACGTGGAGGAGTGGGGTCAGGTGGTCATCATCAACATGCTGACGCGCTACGCCAGAACACAGTTCCTCAACCCCAACATCAACGAGTCTCTGTTGGAGGAGGGCAGCGAGAAGGCTTTCTACGCCTCTGAtgatgaggaagatgaagatAAGAAAGCCGAGGCGGCTGCTCTGGCCAAGAGGAAGCCGTATGTGATGGACCCAGATCACAGACTACTGCTAAGAAACACCAAACCTCTGCTGCAGAGCCGCAACGCTGCCGTGGTGATGGCAGTGGCTCAGCTCTACTTCCATTTGGCTCCTAAAGCAGAGGTGGGCGTCATTGCTAAGGCTTTGGTCAGGCTAATGCGCAGTCACAGTGAAGTGCAGTATGTCGTGCTTCAAAACGTGGCCACCATGACCATCAAGAGAAGGGGAATGTTTGAGCCGTATCTGAAGAGTTTTTATATCCGCTCCACCGACCCGACGCAGATCAAAATTCTCAAGCTGGAGGTTTTGACTAATTTGGCTAACGAGACGAACATCTCCACCATCTTGAGAGAATTTCAGACGTATATTAAGAGCATGGATAAGGATTTTGTAGCTGCCAGCATTCAGGCTATTGGTCGATGTGCTACCAACATCGGTGAAGTCAGAGACACGTGTCTGAACGGCCTCGTACAGCTGCTGTCCAACAGAGATGAGTTAGTTGTGGCTGAATCAGTGGTGGTGATCAAAAAGCTTCTCCAGATGCAGCCCGAGCAGCACAGTGACATCATCAAACACATGGCCAAACTCATCGACAACATTCAGgTCCCGATGGCTCGTGCCAGCATCCTGTGGCTGATCGGCGAGTACTGTGAACACGTTCCCAAGATTGCCCCTGATGTCCTTCGAAAAATGGCCAAAACCTTCACTAATGAGGAGGACATCGTCAAGCTGCAGATCATCAACCTGGCCGCCAAACTATACCTTACTAACTCAAAACAGACTAAGCTGTTGACTCAGTATGTACTGAACCTGGCAAAATATGACCAAAACTACGACATCAGAGATCGTGCCCGCTTCATCCGCCAACTCATTGTGCCCACCGATAAGAGCGGCGCTCTCAGCAAATACGCCAAGAAGCTTTTCCTTGCACTGAAGCCTGCTCCCGTCCTGGAGTCTCCATTTAAAGACAGAGATCACTTCCAGCTGGGGTCACTGTCTCACCTGCTGAACGCTAAGGCCTCCGGATACCAAGAGCTGCCCGACTGGCCCGAATCAGCGCCTGACCCGTCCGTGCGCAACGTGGAGGTTATTAGGCTGCTCGAAAGAGTCACCACTTTAACCAGCATTCCAGAGTGGAGCAAATGCACAAGCCGGAAGGATCGTAAGGAGAAGAAAGTGGAGAAGCCATTTTACTCAGACTCTGAAGGAGAATCTGGCCCGACCGAATCAGCAGATAGTgAATCAGATTCAGGCAGCGGGTCAGAAAGCGCCAGCGGCAGTGAAGAAAGCAGATCCGCCAGATCCGGTTCAGAGAGCGAAGACAGCGGAGAAGAGAGCGAAtctgaggaggaagaggaagacgAAGAGGatcagaagaaaaagaagaaaagattgGAAAAGACCAAAGCTAGGAAGGCGGTGGAGGAGAGTGCAGAAAGTGAGCAGAGCAGTGGTGCCGAGGACAGGAAACGAAGCAGGAAGATGGTGAAGAATCAGAAAAGTGTGTCAGAATCAGACAGCGAATCAGAGAGCAGCGAGTCGGAGGAGGAGTCAGAGGAAGAGTCAGAGGAGGAGTCTGAGTCAGACACTGACATCAGAAAGAAGAAGGCGCCCGTATCAAAACCACCTCCCAAACCATCCAAAAAAGAGAGCAAGAAGGAGAATAAAGAAATGTCTTTGCTGGATCTGGATGACTTTGAACCGGCTCCAGCATCGGCTCCGGTGACTCCAGTTAACTTCCTTTCCAGTAGTCTGGTGTCTGATCTGGAGGGTTTGTCACTGACCGACACTATTCTGGCCCCTACAACTATCGCACCATCCGGTTCAATAAAGATGTATGAGCTCCTGCACCGTATAACGGGCGAGGGTCTGGCGGTGGAGTACTGCTTCAGCAGGCAGCCCTTCAGTCCAGACCCCAACATGGTGGCCGTGCAGATCCAGTTCACCAACAACACCAACGCAGAGACCAAAAACCTGCACATCGAGGAGCCGCGGCTGCAGTCCGGCATGAGGATTCGAGAGTTCTCTGAGATAGAGGTGTTAGCGGCGAATGAATCGGTTACCGTGGTGATGGGAATAGATTTCTGTGATTCTACGCAAGCAGCAAACTTCCAGCTGTGTACTCACACGCGCAAGTTCTACGTTTCAATCCAGCCCCCCGTCGGGGAGCTCATGACTCCAGCGTTTCTGACGGAAAACGACTTTAAGAAGGAGCAAGGTTAG
>TCONS_00048301
TTTGTGCTTGATTCCTTCAGACACGATGACCTGAAGGAGATGCTGGACAGTAATAAAGACTCCCTGAAGCTGGAGGCCATGAAACGCATCGTAGCGATGATCGCACGTGGTAAAAATGCCTCGGATCTTTTCCCTGCAGTGGTGAAGAACGTGGCCTGTAAGAACATCGAGGTGAAGAAGCTGGTGTATGTGTATCTGGTGCGCTACGCTGAAGAGCAGCAGGATCTCGCTCTGCTCTCCATTTCTACCTTCCAGAGAGGATTGAAGGTCCTGAAGAACCTGATCCGAGCGAGCGCTCTGCGTGTGCTGTCCAGCATCAGAGTGACCATCATCGTCCCCATCATGATGCTGGCCATCAAAGAGGCGGCGTCAGACATGTCTCCATACGTCCGCAAGACCGCAGCACATGCCATCCCAAAActacacagTCTGGACCCAGACCAGAAAGATCAGCTGATTGAAGTGATCGAGAAGCTGCTGGCTGATAAAACCACActggTGGCAGGCAGTGTGGTGATGGCGTTTGAGGAAGTCTGTCCTGACCGCATTGACCTGATCCACAAGAACTACCGTAAGCTGTGTAACTTGCTGATCGACGTGGAGGAGTGGGGTCAGGTGGTCATCATCAACATGCTGACGCGCTACGCCAGAACACAGTTCCTCAACCCCAACATCAACGAGTCTCTGTTGGAGGAGGGCAGCGAGAAGGCTTTCTACGCCTCTGAtgatgaggaagatgaagatAAGAAAGCCGAGGCGGCTGCTCTGGCCAAGAGGAAGCCGTATGTGATGGACCCAGATCACAGACTACTGCTAAGAAACACCAAACCTCTGCTGCAGAGCCGCAACGCTGCCGTGGTGATGGCAGTGGCTCAGCTCTACTTCCATTTGGCTCCTAAAGCAGAGGTGGGCGTCATTGCTAAGGCTTTGGTCAGGCTAATGCGCAGTCACAGTGAAGTGCAGTATGTCGTGCTTCAAAACGTGGCCACCATGACCATCAAGAGAAGGGGAATGTTTGAGCCGTATCTGAAGAGTTTTTATATCCGCTCCACCGACCCGACGCAGATCAAAATTCTCAAGCTGGAGGTTTTGACTAATTTGGCTAACGAGACGAACATCTCCACCATCTTGAGAGAATTTCAGACGTATATTAAGAGCATGGATAAGGATTTTGTAGCTGCCAGCATTCAGGCTATTGGTCGATGTGCTACCAACATCGGTGAAGTCAGAGACACGTGTCTGAACGGCCTCGTACAGCTGCTGTCCAACAGAGATGAGTTAGTTGTGGCTGAATCAGTGGTGGTGATCAAAAAGCTTCTCCAGATGCAGCCCGAGCAGCACAGTGACATCATCAAACACATGGCCAAACTCATCGACAACATTCAGgTCCCGATGGCTCGTGCCAGCATCCTGTGGCTGATCGGCGAGTACTGTGAACACGTTCCCAAGATTGCCCCTGATGTCCTTCGAAAAATGGCCAAAACCTTCACTAATGAGGAGGACATCGTCAAGCTGCAGATCATCAACCTGGCCGCCAAACTATACCTTACTAACTCAAAACAGACTAAGCTGTTGACTCAGTATGTACTGAACCTGGCAAAATATGACCAAAACTACGACATCAGAGATCGTGCCCGCTTCATCCGCCAACTCATTGTGCCCACCGATAAGAGCGGCGCTCTCAGCAAATACGCCAAGAAGCTTTTCCTTGCACTGAAGCCTGCTCCCGTCCTGGAGTCTCCATTTAAAGACAGAGATCACTTCCAGCTGGGGTCACTGTCTCACCTGCTGAACGCTAAGGCCTCCGGATACCAAGAGCTGCCCGACTGGCCCGAATCAGCGCCTGACCCGTCCGTGCGCAACGTGGAGGTGAAGGATTCTATTCCAGAGTGGAGCAAATGCACAAGCCGGAAGGATCGTAAGGAGAAGAAAGTGGAGAAGCCATTTTACTCAGACTCTGAAGGAGAATCTGGCCCGACCGAATCAGCAGATAGTgAATCAGATTCAGGCAGCGGGTCAGAAAGCGCCAGCGGCAGTGAAGAAAGCAGATCCGCCAGATCCGGTTCAGAGAGCGAAGACAGCGGAGAAGAGAGCGAAtctgaggaggaagaggaagacgAAGAGGatcagaagaaaaagaagaaaagattgGAAAAGACCAAAGCTAGGAAGGCGGTGGAGGAGAGTGCAGAAAGTGAGCAGAGCAGTGGTGCCGAGGACAGGAAACGAAGCAGGAAGATGGTGAAGAATCAGAAAAGTGTGTCAGAATCAGACAGCGAATCAGAGAGCAGCGAGTCGGAGGAGGAGTCAGAGGAAGAGTCAGAGGAGGAGTCTGAGTCAGACACTGACATCAGAAAGAAGAAGGCGCCCGTATCAAAACCACCTCCCAAACCATCCAAAAAAGAGAGCAAGAAGGAGAATAAAGAAATGTCTTTGCTGGATCTGGATGACTTTGAACCGGCTCCAGCATCGGCTCCGGTGACTCCAGTTAACTTCCTTTCCAGTAGTCTGGTGTCTGATCTGGAGGGTTTGTCACTGACCGACACTATTCTGGCCCCTACAACTATCGCACCATCCGGTTCAATAAAGATGTATGAGCTCCTGCACCGTATAACGGGCGAGGGTCTGGCGGTGGAGTACTGCTTCAGCAGGCAGCCCTTCAGTCCAGACCCCAACATGGTGGCCGTGCAGATCCAGTTCACCAACAACACCAACGCAGAGACCAAAAACCTGCACATCGAGGAGCCGCGGCTGCAGTCCGGCATGAGGATTCGAGAGTTCTCTGAGATAGAGGTGTTAGCGGCGAATGAATCGGTTACCGTGGTGATGGGAATAGATTTCTGTGATTCTACGCAAGCAGCAAACTTCCAGCTGTGTACTCACACGCGCAAGTTCTACGTTTCAATCCAGCCCCCCGTCGGGGAGCTCATGACTCCAGCGTTTCTGACGGAAAACGACTTTAAGAAGGAGCAA

Function

symbol description
ap3b2 Predicted to enable clathrin binding activity. Predicted to be involved in anterograde synaptic vesicle transport and vesicle-mediated transport. Predicted to be located in intracellular vesicle. Predicted to be part of AP-3 adaptor complex. Implicated in developmental and epileptic encephalopathy 48.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000105296

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00048300 False 2967 mRNA 0.52 25 5702094 5740334
TCONS_00048301 True 2973 mRNA 0.52 24 5702100 5740373

Neighbor

gene id symbol gene type direction distance location
XLOC_024439 NA coding downstream 235285 5466493 ~ 5466809 (-)
XLOC_024438 CABZ01039859.2 coding downstream 360992 5340962 ~ 5341102 (-)
XLOC_024437 NA coding downstream 401602 5296432 ~ 5300492 (-)
XLOC_024436 shisal1b coding downstream 512105 5098062 ~ 5189989 (-)
XLOC_024435 NA coding downstream 770494 4930365 ~ 4931600 (-)
XLOC_024441 NA coding upstream 35658 5776031 ~ 5777257 (-)
XLOC_024442 appl2 coding upstream 50163 5790536 ~ 5815834 (-)
XLOC_024443 CABZ01067754.1 coding upstream 143369 5883742 ~ 5903572 (-)
XLOC_024444 CABZ01067752.1 coding upstream 187798 5928171 ~ 5928286 (-)
XLOC_024445 nuak1b coding upstream 195565 5935938 ~ 5963535 (-)
XLOC_024434 cyp19a1b non-coding downstream 797662 4890767 ~ 4904432 (-)
XLOC_024449 AL929134.1 non-coding upstream 333559 6073932 ~ 6074050 (-)
XLOC_024450 NA non-coding upstream 427753 6168126 ~ 6177023 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000139_00109592_00137922 AP3B2 coding CI01000139 null 109592 ~ 138972 (+)