XLOC_024443 (CABZ01067754.1)


Basic Information

Item Value
gene id XLOC_024443
gene name CABZ01067754.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007136.7
NCBI id CM002909.2
chromosome length 37502051
location 5883742 ~ 5903572 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00048303
tatcgtGATCTTTTTAGGATTATTTTCCAATACTAATTTCTTTTTTACCCCTTAATAGCTACATcggatgtaaaaaaaacattattattattaaaaaaaaaaaaaaaataataataataataaaaaacgctCTTTTTGAGTACCTGTTGTCTTCTATCCTGCGCATGCGCATTGTAGTAATGCTTCGTTTGCGACTGTTTGAATCTTTGGTGACATGGAAAGCACACCACAACTCGTCGAGTTAAAGCTCACCGAGTAAGGATAAAAAACGTGATACTGCAAAACTATGtgGTTTCCAACTCCATCATTAAAATTCCCCAGAGTCGCTTCGGAGCAGTTGCTCTTCCACAATGACCACTAGTTTCTCGAGCTGTGACGTCAAGGGAAGTGGGACAGAGGAATTCTGGGTAAAGGGAGAGGTGCCTGAACCACTGAGGTGTTGTGAAGGAATTCCCACCTCCGTCTTCACTCTCATTTACGAGACCCACATAAATCCAAGCCTGTTTATCATTTCCGTCCAATCAGGAGACACATTTATGAACAGGTAAGAGCAGGGCAGAAACTCCTCGCAGGTGTACAGTCAGAAACAGGGCAGAGGGTCGCAGGAGGAAAAGCAGAATCAGGACCACATGTAGACGCAGTCATCACGGCAGATCAAAGCCCGCCAAACTCACAGCCGAGATCAAAAGAGGCCGAGTTACTCTCGCGTGAGCCCTACACGGCCCTGAGGTGGACTGGACTGCATTAGACATCTGAGCTGAGGGTTTCCAAAACTAACAAGAAAGCATAATAGACGAGCGGGGAGATTCAGTGAGACATTGTACCACCAAAACACTTTTGTACTAGACGCCATATTTAAGTAATAGTTGTTGcatgaaagaaaaataaacattttaaacttgaacaTGTTTATGCATAATGTATGAGCTTTGGAATATAATTAAAGTGCGTTGTGGTTTAGGGTGTTTGTCAACAGCCATATACTGAAAATGGAAGGTTTTTCCATTGCATTTTTATGGTGTTGACAAAACTTTTTGTAAAGTACTCTAATGTGCACGCCAGGCCAGTAGATGGCCGTGTCATTTTGTAAAGAAACACTATGCGCCTGCACAAATGTGGTTCTaaggtccgttctttgtacctcgcttaaatgatctaagatgatttggcagatcctggatcttttaatcttgataactgatctctcgctaatttggttctccgaagaagttcacgaatcagattagcatatctggatgaactgatctgagatcgctgcgtgtgttgtgaaggacagatctatcaatcctcgaaatcatgatcagcaatgcaactattggctgacggcacatcaacgtaatgacatcatctgattaatattcaattatccatgttagtaaaattacatcaaattagcagtaaaccgtttgttaaatatgacacgcaataaccttccacatttgttgagAGCTgcgcaggctttacactttcatgtgtcaagagtattcatcatgtatttagttctacatttagaaaatattttctttattatagtagccgttattttaatcagtgtaaagaataactggatgtttacaaaagcattttgatattggtaaaggtgtctgcaacttttgtgaagcatcaagtcaccgtcatattaactgtcaaaatatGTTTATGTCAGCATAaatttattattgctttttaaaaaaatgacatattgtgcatttctattatacacaaattgttctaaagcgatctaaaaagttcatatcaataagttttctctttgcaccaccaggtgggagtctttgtactttcatttcggagtgcagattgcaagttttaataatatatatttttaacttaaaaaaaaaaaaaaaaaaaaaaaaaaaaatatatatatatatatatatatatatatatatatatatatatatatagttgaaaaaAAGTTACTATTTTG
>TCONS_00049330
CTTCTATCCTGCGCATGCGCATTGTAGTAATGCTTCGTTTGCGACTGTTTGAATCTTTGGTGACATGGAAAGCACACCACAACTCGTCGAGTTAAAGCTCACCGAGTAAGGATAAAAAACGTGATACTGCAAAACTATGtgGTTTCCAACTCCATCATTAAAATTCCCCAGAGTCGCTTCGGAGCAGTTGCTCTTCCACAATGACCACTAGTTTCTCGAGCTGTGACGTCAAGGGAAGTGGGACAGAGGAATTCTGGGTAAAGGGAGAGGTGCCTGA

Function

GO:

id name namespace
GO:0090304 nucleic acid metabolic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0000214 tRNA-intron endonuclease complex cellular_component
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000117522

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00048303 False 1969 lncRNA 0.37 3 5883742 5903572
TCONS_00049330 True 277 lncRNA 0.47 2 5902225 5903422

Neighbor

gene id symbol gene type direction distance location
XLOC_024442 appl2 coding downstream 67908 5790536 ~ 5815834 (-)
XLOC_024441 NA coding downstream 106485 5776031 ~ 5777257 (-)
XLOC_024440 AP3B2 coding downstream 143369 5702094 ~ 5740373 (-)
XLOC_024439 NA coding downstream 416933 5466493 ~ 5466809 (-)
XLOC_024438 CABZ01039859.2 coding downstream 542640 5340962 ~ 5341102 (-)
XLOC_024444 CABZ01067752.1 coding upstream 24599 5928171 ~ 5928286 (-)
XLOC_024445 nuak1b coding upstream 32366 5935938 ~ 5963535 (-)
XLOC_024446 snx22 coding upstream 89217 5992789 ~ 6011047 (-)
XLOC_024447 snx1a coding upstream 113070 6016642 ~ 6049339 (-)
XLOC_024448 cpeb1a coding upstream 161439 6065011 ~ 6082509 (-)
XLOC_024437 NA non-coding downstream 583250 5296432 ~ 5300492 (-)
XLOC_024435 NA non-coding downstream 952142 4930365 ~ 4931600 (-)
XLOC_024449 AL929134.1 non-coding upstream 170360 6073932 ~ 6074050 (-)
XLOC_024450 NA non-coding upstream 264554 6168126 ~ 6177023 (-)
XLOC_024453 BX296538.1 non-coding upstream 373146 6276718 ~ 6276855 (-)
XLOC_024458 NA non-coding upstream 586770 6490342 ~ 6499642 (-)

Expression


Co-expression Network