XLOC_024446 (snx22)


Basic Information

Item Value
gene id XLOC_024446
gene name snx22
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007136.7
NCBI id CM002909.2
chromosome length 37502051
location 5992789 ~ 6011047 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00048306
ACAACACTCTTAGTCGAGGTGAGCTTCAgtctagtttgtgtgtgtgtgtgtgtgtgtgtgtgtttgagatgtTGGACCATCAGTGTGTGTCTCCTGTCATCGAGGTCTTCATTCCGTCTCTCATGAGGGAAGTGGACGAGACGGGAAAGTTGCGCAAACTCTTCAGGGTGGAGATTCTCTTCAATGGAAGGAAGCACTTTGTTTTACGGCGACACGGCGAGTTTCAGACGCTTCACAGGAAGGTGAAGAAGATTCTGCGAGTTCCTGATTTCCCCAGCAAGAGAAACCAGCATCTGCGAACCAAACCACTGGAGCAAAGACGACAAGAACTCGAGGACTACATCCAGGTGATTCTCTATCAGAATGATGTTGTTCCTCAAGAGCTTCTGGATTTCCTGCAGGTCAAACATTTTCATCCAACAAGCAAGAACTGCAGCTCTGATGAAAACCAGTCAGATTACTGTCGGGAGCAGGAATACAGATATCAGTCATTTCATCAGCGAGTAGTTGGTTTTTCGGCTGACCCTTACCAGCTTGAATCCAGATCAGATCTCCCTGATATCGTGgttgccggtgtcctgcagggttTTTACCCTAAAGATGTCAAAGTGAGTTTCAAAAAGAGCTGCGGTAAACCCAGCGGCGTCACCTGTGCTCCAGCGCTACCCGCGCATCCCAAAATCCCCATTATTACCATCAACAGAAGCAGCGTCAGCTCACTGCCAGTATGAGCATTGCCTAACAACTTGGTCTCATTTAAATGTGCCTTTACATGAGTGTACAGTATCGATTGAATCCTTCTCATGTTAATATTACAACCATTTAGATGTTTTTcatgaaaaaatattgtttaaaaatagctCTGTTTATCATATTTAGCACAAAAAAGTTGTTAAATCCTGTACAGtacaactgtaatcatacatcATCATATTCATAACCTTTTACTGTGTtagaatattatattattgtttgacAAACAGAAGTCATAATGATACTAAACATAAGGCATATGAACATAACTAACTTGTTAATTAAattctataaataata
>TCONS_00048307
TCAGAGAGCATTCACAACACTCTTAGTCGAGGTGAGCTTCAgtctagtttgtgtgtgtgtgtgtgtgtgtgtgtgtttgagatgtTGGACCATCAGTGTGTGTCTCCTGTCATCGAGGTCTTCATTCCGTCTCTCATGAGGGAAGTGGACGAGACGGGAAAGTTGCGCAAACTCTTCAGGGTGGAGATTCTCTTCAATGGAAGGAAGCACTTTGTTTTACGGCGACACGGCGAGTTTCAGACGCTTCACAGGAAGGTGAAGAAGATTCTGCGAGTTCCTGATTTCCCCAGCAAGAGAAACCAGCATCTGCGAACCAAACCACTGGAGCAAAGACGACAAGAACTCGAGGACTACATCCAGGTGATTCTCTATCAGAATGATGTTGTTCCTCAAGAGCTTCTGGATTTCCTGCAGGTCAAACATTTTCATCCAACAAGCAAGAACTGCAGCTCTGAATCTCCCTGATATCGTGgttgccggtgtcctgcagggttTTTACCCTAAAGATGTCAAAGTGAGTTTCAAAAAGAGCTGCGGTAAACCCAGCGGCGTCACCTGTGCTCCAGCGCTACCCGCGCATCCCAAAATCCCCATTATTACCATCAACAGAAGCAGCGTCAGCTCACTGCCAGTATGAGCATTGCCTAACAACTTGGTCTCATTTAAATGTGCCTTTACATGAGTGTACAGTATCGATTGAATCCTTCTCATGTTAATATTACAACCATTTAGATGTTTTTcatgaaaaaatattgtttaaaaatagctCTGTTTATCATATTTAGCACAAAAAAGTTGTTAAATCCTGTACAGtacaactgtaatcatacatcATCATA

Function

symbol description
snx22 Predicted to enable phosphatidylinositol phosphate binding activity. Orthologous to human SNX22 (sorting nexin 22).

GO:

id name namespace
GO:0005575 cellular_component cellular_component
GO:0035091 phosphatidylinositol binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060825-154 Predicted to enable phosphatidylinositol phosphate binding activity. Orthologous to human SNX22 (sorting nexin 22).

Ensembl:

ensembl_id ENSDARG00000053204

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00048306 False 1053 mRNA 0.42 6 5992789 6011034
TCONS_00048307 True 839 mRNA 0.44 4 5992909 6011047

Neighbor

gene id symbol gene type direction distance location
XLOC_024445 nuak1b coding downstream 29254 5935938 ~ 5963535 (-)
XLOC_024444 CABZ01067752.1 coding downstream 64503 5928171 ~ 5928286 (-)
XLOC_024443 CABZ01067754.1 coding downstream 89217 5883742 ~ 5903572 (-)
XLOC_024442 appl2 coding downstream 176955 5790536 ~ 5815834 (-)
XLOC_024441 NA coding downstream 215532 5776031 ~ 5777257 (-)
XLOC_024447 snx1a coding upstream 5595 6016642 ~ 6049339 (-)
XLOC_024448 cpeb1a coding upstream 53964 6065011 ~ 6082509 (-)
XLOC_024449 AL929134.1 coding upstream 62885 6073932 ~ 6074050 (-)
XLOC_024450 NA coding upstream 157079 6168126 ~ 6177023 (-)
XLOC_024451 psma4 coding upstream 200630 6211677 ~ 6223567 (-)
XLOC_024439 NA non-coding downstream 525980 5466493 ~ 5466809 (-)
XLOC_024438 CABZ01039859.2 non-coding downstream 651687 5340962 ~ 5341102 (-)
XLOC_024453 BX296538.1 non-coding upstream 265671 6276718 ~ 6276855 (-)
XLOC_024458 NA non-coding upstream 479295 6490342 ~ 6499642 (-)
XLOC_024460 NA non-coding upstream 665804 6676851 ~ 6677989 (-)

Expression


Co-expression Network