XLOC_024448 (cpeb1a)


Basic Information

Item Value
gene id XLOC_024448
gene name cpeb1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007136.7
NCBI id CM002909.2
chromosome length 37502051
location 6065011 ~ 6082509 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00048309
TGCAGCGGCGTAATACTCGTTTTAAGCGGTCTGAACGGTTTCATAAAGTCCGAATTTTCGTGTTTTTGTTCCTTCAACTTCCTTTTAGACGCTCTGTATGGATTTCCGCAGGggaAAGAAGAATTGCTGTTATCCCGCTTATGGAGAATGGTTAGCTCACAGGGCCTTTGGGCCCTTCATAGGTGCCAAACAACACACCAATTGGAAACACACACATGATGGTTCAGGCTCTTCCACAGTTAGCAGTATGCTGTTGGCTCCAGAGCAGCAGGATCATCCGGCCGCTGTGCCCAGCGATGAAGAGCTCAGTCTGGGCCTGCTATCGCTCGCTCTCCCCTGCTGGTATCAGGAGCTCTGGAGCCGCCCTGAAGCCCAGCGGGATGTCCAGACTCCATTAAATCTCTTGGGTTCATCACGAGGTGATGGTGATTGGGTTCAGCATCAAGCTCTCCAGGCCCATGAGTCTGCAGGAGGACGAGATTCACTGACCCCcacactggagactcactctctGCTACACTCCGGCTCCAGCAGCCCTGTCAACTCCGAGAACAGCGCCGTCTCTTCAGGGTCAGAGCACCTGGCGTCTCTCAGAGTTTCTCCTCCGTTGCCGCTGTTGCTCTCAGGACTGCGTGTGGAGGACCTGAAATTAGGCTCAGATGTTGGTTTGGATCAGAATCCGCTGAACACCTTCATGAACGCCTCCAGCGGCCGGGCTGAGGGCTCCGTGTTCAGCCGCTGGTCCACAGGTCCCGTCTGGCCAGGCTGGGACACTTTGGGCTTGAATAAACCCTCATTCTGCATCGAGAGAGAGGCGAAGCTTCATAAACAAGCTGCAGCCGTGAATGAAGCCTCATACAGCTGGGAGGGGAGTCTTCCTCCGCGTCACTACAAAACCCCAGTGTACTCCTGTAAAGTGTTTCTGGGAGGAGTGCCGTGGGACATCACAGAGGCGAGTCTGCAGAGCACATTTAGTGTATTTGGCCCATTGAAAGTGGAGTGGCCTGGTAAAGATGGCAAACATCCGCGATGTCCTCCTCAAGGTTATGTCTATCTACTGTTTGACTGGGAGAAGTCTGTGAAGTCTCTCCTGCTGGCATGTACTCAACACCGCCTGCAGGCCGACGACTATCTCCAGTTTTACTACAAACTCTCCAGCAGGAGGATCCACAGCAAAGACGTGCAGGTCATCCCCTGGGTGATTTCAGACAGTAATTTTATCCGCTGTCCCTCTCAGCGCCTCTGCCGCAATAAGACTGTGTTTGTGGGCGCTCTGCACGGGATGCTGAACGCTGAGGGTCTGGCTCACATCATGGATGAGCTCTTTGGGGGTGTCATGTACGCCGGCATCGACACAGACAAGCACAAGTATCCTATAGGTTCAGGCAGAGTGACGTTCAGGAGCCAGAGGAGCTACTTGAAAGCTGTCACTGCAGCATTTGTGCAGATAAAAACCTCCAAGTTTACCAAGAAGGTCCAGATTGACCCGTATCTGGATGACTCCATCTGCCAAATATGTAGCAGTCAGCCTGGGCCGTTCTTCTGTAGGGCTCAGGCCTGTTTTAAATACTACTGTCGGTCATGCTGGCACTGGCGTCACTCCCTGGACGTGTTGAGCAGCCATCAGCCTCTCATGCGCAACCAGAAGagcctaaacccaacctaaaCCCCCCGAGTGGGAAAGAGTCCGGA
>TCONS_00048310
agTGAGTGAGCGTGGCTTTAGCACTAGCAGCAGTGTGTGAGGTTTCAGCTGGTCGCTCACATGTTTAACAGATGGTTCAGGCTCTTCCACAGTTAGCAGTATGCTGTTGGCTCCAGAGCAGCAGGATCATCCGGCCGCTGTGCCCAGCGATGAAGAGCTCAGTCTGGGCCTGCTATCGCTCGCTCTCCCCTGCTGGTATCAGGAGCTCTGGAGCCGCCCTGAAGCCCAGCGGGATGTCCAGACTCCATTAAATCTCTTGGGTTCATCACGAGGTGATGGTGATTGGGTTCAGCATCAAGCTCTCCAGGCCCATGAGTCTGCAGGAGGACGAGATTCACTGACCCCcacactggagactcactctctGCTACACTCCGGCTCCAGCAGCCCTGTCAACTCCGAGAACAGCGCCGTCTCTTCAGGGTCAGAGCACCTGGCGTCTCTCAGAGTTTCTCCTCCGTTGCCGCTGTTGCTCTCAGGACTGCGTGTGGAGGACCTGAAATTAGGCTCAGATGTTGGTTTGGATCAGAATCCGCTGAACACCTTCATGAACGCCTCCAGCGGCCGGGCTGAGGGCTCCGTGTTCAGCCGCTGGTCCACAGGTCCCGTCTGGCCAGGCTGGGACACTTTGGGCTTGAATAAACCCTCATTCTGCATCGAGAGAGAGGCGAAGCTTCATAAACAAGCTGCAGCCGTGAATGAAGCCTCATACAGCTGGGAGGGGAGTCTTCCTCCGCGTCACTACAAAACCCCAGTGTACTCCTGTAAAGTGTTTCTGGGAGGAGTGCCGTGGGACATCACAGAGG

Function

symbol description
cpeb1a Predicted to enable mRNA 3'-UTR binding activity; ribosome binding activity; and translation regulator activity, nucleic acid binding. Predicted to be involved in negative regulation of cytoplasmic translation. Predicted to act upstream of or within mRNA processing and regulation of translation. Predicted to be part of messenger ribonucleoprotein complex. Predicted to be active in several cellular components, including neuron projection; nucleus; and synapse. Orthologous to human CPEB1 (cytoplasmic polyadenylation element binding protein 1).

GO:

id name namespace
GO:2000766 negative regulation of cytoplasmic translation biological_process
GO:0006417 regulation of translation biological_process
GO:0043005 neuron projection cellular_component
GO:1990124 messenger ribonucleoprotein complex cellular_component
GO:0045202 synapse cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0008135 translation factor activity, RNA binding molecular_function
GO:0043022 ribosome binding molecular_function
GO:0000900 translation repressor activity, mRNA regulatory element binding molecular_function
GO:0045182 translation regulator activity molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003730 mRNA 3'-UTR binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080723-42 Predicted to enable mRNA 3'-UTR binding activity; ribosome binding activity; and translation regulator activity, nucleic acid binding. Predicted to be involved in negative regulation of cytoplasmic translation. Predicted to act upstream of or within mRNA processing and regulation of translation. Predicted to be part of messenger ribonucleoprotein complex. Predicted to be active in several cellular components, including neuron projection; nucleus; and synapse. Orthologous to human CPEB1 (cytoplasmic polyadenylation element binding protein 1).

Ensembl:

ensembl_id ENSDARG00000045932

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00048309 False 1692 mRNA 0.53 12 6065011 6082509
TCONS_00048310 True 806 processed_transcript 0.57 5 6071595 6079431

Neighbor

gene id symbol gene type direction distance location
XLOC_024447 snx1a coding downstream 15672 6016642 ~ 6049339 (-)
XLOC_024446 snx22 coding downstream 53964 5992789 ~ 6011047 (-)
XLOC_024445 nuak1b coding downstream 101476 5935938 ~ 5963535 (-)
XLOC_024444 CABZ01067752.1 coding downstream 136725 5928171 ~ 5928286 (-)
XLOC_024443 CABZ01067754.1 coding downstream 161439 5883742 ~ 5903572 (-)
XLOC_024450 NA coding upstream 85617 6168126 ~ 6177023 (-)
XLOC_024451 psma4 coding upstream 129168 6211677 ~ 6223567 (-)
XLOC_024452 ireb2 coding upstream 145987 6228496 ~ 6261693 (-)
XLOC_024453 BX296538.1 coding upstream 194209 6276718 ~ 6276855 (-)
XLOC_024454 wdr61 coding upstream 198482 6280991 ~ 6292560 (-)
XLOC_024441 NA non-coding downstream 287754 5776031 ~ 5777257 (-)
XLOC_024439 NA non-coding downstream 598202 5466493 ~ 5466809 (-)
XLOC_024438 CABZ01039859.2 non-coding downstream 723909 5340962 ~ 5341102 (-)
XLOC_024458 NA non-coding upstream 407833 6490342 ~ 6499642 (-)
XLOC_024460 NA non-coding upstream 594342 6676851 ~ 6677989 (-)
XLOC_024461 CABZ01070017.1 non-coding upstream 759699 6842208 ~ 6842323 (-)

Expression


Co-expression Network