XLOC_024458


Basic Information

Item Value
gene id XLOC_024458
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007136.7
NCBI id CM002909.2
chromosome length 37502051
location 6490342 ~ 6499642 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00049333
GCGTAACGTATCAGCACAAACGgtcCCCAAAATGCCACTGGGGTGTAAATGGATGGCCgaaatgttttctgtttaaaaATCTGGCCCTCATCCAGTTTCTACATCTGTAGAGTTTGGTAACCCGTCGCCTCCCTGCTTATAAAACTGCACAAAGTCAGCAGAAATTATAGAAGATATGTGAGTTATGCTTGTCAGAACATCTTCATCTTGTTGTAAACCCAAGGATTGGAAAGAATGACAAAGTGAGCAAGCTGATACAGCAGAAAAGAAAAGTCAGTAAAGAAAAGAA
>TCONS_00049334
AGAATTTTAAGTTTGTATTACGAAGTTCTAAGAAATAAGTGgcaattacttaattttattttttattcagtggTGGGAACTGACTTTCATAAGTTACTTCTTCACactgaaagacttttgttttgaaACGTCTCACCATATGGATCGCAGTAAATCACTTCAGGTCAACCAGCCAATCAGGGCGCGGAGCAAAGACAGTGGACACGCCCACTTGAAGACATAAAACCGTTGGTTTCTCCTCAGAGAAAAAGgtcCCCAAAATGCCACTGGGGTGTAAATGGATGGCCgaaatgttttctgtttaaaaATCTGGCCCTCATCCAGTTTCTACATCTGTAGAGTTTGGTAACCCGTCGCCTCCCTGCTTATAAAACTGCACAAAGTCAGCAGAAATTATAGAAGATATGTGAGTTATGCTTGTCAGAACATCTTCATCTTGTTGTAAACCCAAGGATTGGAAAGAATGACAAAGTGAGCAAGCTGATACAGCAGAAAAGAAAAGTCAGTAAAGAAAAGAA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00049333 False 289 lncRNA 0.41 3 6490342 6499056
TCONS_00049334 True 518 lncRNA 0.39 3 6490342 6499642

Neighbor

gene id symbol gene type direction distance location
XLOC_024457 snupn coding downstream 42292 6432578 ~ 6448050 (-)
XLOC_024456 ptpn9a coding downstream 57879 6403836 ~ 6432463 (-)
XLOC_024455 sin3aa coding downstream 99071 6349892 ~ 6391271 (-)
XLOC_024454 wdr61 coding downstream 197782 6280991 ~ 6292560 (-)
XLOC_024453 BX296538.1 coding downstream 213487 6276718 ~ 6276855 (-)
XLOC_024459 cspg4 coding upstream 7499 6507141 ~ 6629281 (-)
XLOC_024460 NA coding upstream 177209 6676851 ~ 6677989 (-)
XLOC_024461 CABZ01070017.1 coding upstream 342566 6842208 ~ 6842323 (-)
XLOC_024462 NA coding upstream 442201 6941843 ~ 6942687 (-)
XLOC_024463 NA coding upstream 912918 7412560 ~ 7420922 (-)
XLOC_024450 NA non-coding downstream 313319 6168126 ~ 6177023 (-)
XLOC_024449 AL929134.1 non-coding downstream 416292 6073932 ~ 6074050 (-)
XLOC_024444 CABZ01067752.1 non-coding downstream 562056 5928171 ~ 5928286 (-)
XLOC_024443 CABZ01067754.1 non-coding downstream 586770 5883742 ~ 5903572 (-)
XLOC_024465 NA non-coding upstream 1062645 7562287 ~ 7563339 (-)

Expression


Co-expression Network