G544817


Basic Information

Item Value
gene id G544817
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 74594794 ~ 74595064 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU616907
aagatctgcaaagaggagtgggacaaaaatccgtcctgagatgtgtgcaaacctggtggccaactaataaaatccaaatcaaatcaaactacaagaaacgtctgacctctgtgattgccaacaagggttttgccaccaagtactaagtcatgttttgcagagggggtcaaatacttatttccctcattaaaatgcaaatcaatttataacatttttgaaattcgtttttctggattttgttgttgttattctgtctctcactgttcaaata

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU616907 True 271 lncRNA 0.37 1 74594794 74595064

Neighbor

gene id symbol gene type direction distance location
LOC110526572 LOC106562350 coding upstream 13803 74536945 ~ 74580991 (+)
LOC110526571 LOC106562351 coding upstream 58358 74509447 ~ 74536436 (+)
LOC110526570 cyp1a3 coding upstream 85762 74505044 ~ 74509032 (+)
LOC110526569 LOC106562354 coding upstream 130980 74443137 ~ 74463814 (+)
LOC110526568 LOC106587550 coding upstream 164117 74395368 ~ 74430677 (+)
LOC110515568 LOC106587555 coding downstream 6450 74601514 ~ 74607809 (+)
LOC110526573 LOC106594537 coding downstream 14327 74609391 ~ 74612035 (+)
LOC110526575 LOC106587557 coding downstream 35955 74631019 ~ 74656748 (+)
LOC110526576 tm2d3 coding downstream 61824 74656888 ~ 74663789 (+)
LOC110526577 LOC106587561 coding downstream 77120 74672184 ~ 74732529 (+)
G544739 NA non-coding upstream 95698 74496090 ~ 74499096 (+)
G544766 NA non-coding upstream 102211 74492278 ~ 74492583 (+)
G544761 NA non-coding upstream 114382 74480158 ~ 74480412 (+)
G544758 NA non-coding upstream 124336 74469982 ~ 74470458 (+)
G544757 NA non-coding upstream 125986 74468264 ~ 74468808 (+)
G544828 NA non-coding downstream 17027 74612091 ~ 74612578 (+)
G544829 NA non-coding downstream 19470 74614534 ~ 74614920 (+)
G544830 NA non-coding downstream 20067 74615131 ~ 74615703 (+)
G544831 NA non-coding downstream 20758 74615822 ~ 74616032 (+)
G544832 NA non-coding downstream 20997 74616061 ~ 74616267 (+)
G544565 NA other upstream 306656 74287778 ~ 74288138 (+)
LOC100136290 sox6 other upstream 1207107 73190979 ~ 73392251 (+)
LOC110526543 LOC106587517 other upstream 1449447 73037953 ~ 73182742 (+)
G542890 NA other upstream 1827943 72765681 ~ 72766851 (+)
saa saa other upstream 1927922 72665460 ~ 72666872 (+)
G545485 NA other downstream 642736 75237800 ~ 75238164 (+)
G545601 NA other downstream 826797 75421861 ~ 75422752 (+)
G546464 LOC106562315 other downstream 1333164 75928228 ~ 75970674 (+)
LOC110526968 fto other downstream 2292368 76827001 ~ 77038395 (+)
G547884 NA other downstream 2682928 77277992 ~ 77279354 (+)

Expression


Co-expression Network