G545363


Basic Information

Item Value
gene id G545363
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 74992612 ~ 74993103 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU617522
ACCAAAACACTTCATacatgtgtaacggttttcttctggggaaagagaggcggaccaaaatgcagcgtggttagttttgtgcatctttaataaagatgaaagtacaacaatttacaaaacaagaaacgtgggaagaagaagaagaagaagaagaagaaccatatcaggccaaacatagaaatagacataccagacacacaacatagaatgcccacccagctcacgtcctgaccaacactaaaacaaggaaaacacacacgaacgatggtcagaacgtgacaacatgtCTCAAATCAACTCATTCTTCCATAACACTAGCAAAGGTTGTCACCCAACAAGCACACTTTGTCACTCATAAAACATTGACCTAAAAAACACTAACAACGGGTAGCATTGCACAATGTTTTCTTTTGTAAAATGTCTTTACAAAACAAgaatgacacctctctactgttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU617522 True 456 lncRNA 0.39 2 74992612 74993103

Neighbor

gene id symbol gene type direction distance location
LOC118965044 LOC106609580 coding upstream 88929 74902940 ~ 74903683 (+)
LOC110526579 LOC106562344 coding upstream 197243 74777279 ~ 74795369 (+)
LOC110526577 LOC106587561 coding upstream 260083 74672184 ~ 74732529 (+)
LOC110526576 tm2d3 coding upstream 328823 74656888 ~ 74663789 (+)
LOC110526575 LOC106587557 coding upstream 335864 74631019 ~ 74656748 (+)
LOC110526583 LOC106562374 coding downstream 175465 75168568 ~ 75194690 (+)
LOC110526584 LOC106587566 coding downstream 323402 75316505 ~ 75324636 (+)
LOC110526588 LOC106562377 coding downstream 400694 75393797 ~ 75408675 (+)
LOC110526592 LOC106587573 coding downstream 461884 75454987 ~ 75456513 (+)
LOC110526593 cnep1r1 coding downstream 463499 75456602 ~ 75459378 (+)
G545117 NA non-coding upstream 254302 74738065 ~ 74738310 (+)
G544865 NA non-coding upstream 268401 74704257 ~ 74724211 (+)
G544805 NA non-coding upstream 353424 74616477 ~ 74639188 (+)
G544832 NA non-coding upstream 376345 74616061 ~ 74616267 (+)
G545457 NA non-coding downstream 196616 75189719 ~ 75190182 (+)
G545460 NA non-coding downstream 205203 75198306 ~ 75198529 (+)
G545462 NA non-coding downstream 206608 75199711 ~ 75204903 (+)
G545464 NA non-coding downstream 213180 75206283 ~ 75206642 (+)
G545470 NA non-coding downstream 224235 75217338 ~ 75217617 (+)
G544565 NA other upstream 704474 74287778 ~ 74288138 (+)
LOC100136290 sox6 other upstream 1604925 73190979 ~ 73392251 (+)
LOC110526543 LOC106587517 other upstream 1847265 73037953 ~ 73182742 (+)
G542890 NA other upstream 2225761 72765681 ~ 72766851 (+)
saa saa other upstream 2325740 72665460 ~ 72666872 (+)
G545485 NA other downstream 244697 75237800 ~ 75238164 (+)
G545601 NA other downstream 428758 75421861 ~ 75422752 (+)
G546464 LOC106562315 other downstream 935125 75928228 ~ 75970674 (+)
LOC110526968 fto other downstream 1894329 76827001 ~ 77038395 (+)
G547884 NA other downstream 2284889 77277992 ~ 77279354 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000299_06430810_06434834 NA coding CI01000299 null 6428051 ~ 6435178 (+)